Wall clock time and date at job start Thu Apr 9 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00347 * 2 1 4 4 H 1.09002 * 109.47242 * 24.27109 * 3 2 1 5 5 C 1.53004 * 109.46854 * 264.27519 * 3 2 1 6 6 N 1.46895 * 109.47101 * 64.99796 * 5 3 2 7 7 C 1.46904 * 110.99947 * 180.02562 * 6 5 3 8 8 H 1.08992 * 109.46783 * 325.00089 * 7 6 5 9 9 C 1.53002 * 109.47315 * 85.00043 * 7 6 5 10 10 C 1.50699 * 109.47062 * 204.99785 * 7 6 5 11 11 H 1.07999 * 119.99973 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99938 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00135 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00157 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47371 * 89.99639 * 14 12 10 16 16 H 1.48503 * 109.47238 * 209.99820 * 14 12 10 17 17 H 1.48505 * 109.46970 * 329.99870 * 14 12 10 18 18 C 1.52994 * 109.47363 * 144.27563 * 3 2 1 19 19 C 1.52999 * 117.50007 * 6.90182 * 18 3 2 20 20 C 1.53004 * 117.49689 * 298.24222 * 18 3 2 21 21 H 1.09001 * 109.47304 * 305.43328 * 1 2 3 22 22 H 1.09002 * 109.46697 * 65.42722 * 1 2 3 23 23 H 1.08997 * 109.47310 * 185.42495 * 1 2 3 24 24 H 1.09005 * 109.46925 * 304.99689 * 5 3 2 25 25 H 1.08994 * 109.47143 * 185.00133 * 5 3 2 26 26 H 1.00900 * 111.00468 * 56.04828 * 6 5 3 27 27 H 1.08993 * 109.46931 * 180.02562 * 9 7 6 28 28 H 1.09005 * 109.46916 * 59.99992 * 9 7 6 29 29 H 1.09001 * 109.46837 * 300.00216 * 9 7 6 30 30 H 0.96996 * 120.00321 * 180.02562 * 13 12 10 31 31 H 1.08996 * 115.55417 * 152.57493 * 18 3 2 32 32 H 1.08999 * 117.49966 * 359.97438 * 19 18 3 33 33 H 1.08996 * 117.50037 * 145.02378 * 19 18 3 34 34 H 1.08997 * 117.49705 * 214.98097 * 20 18 3 35 35 H 1.08998 * 117.49880 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3023 2.0185 0.4224 5 6 2.3492 1.7128 -1.4354 6 7 1.1101 1.8391 -2.2140 7 6 1.3972 2.2293 -3.6009 8 1 2.2544 2.9023 -3.6188 9 6 1.7117 0.9807 -4.4274 10 6 0.1969 2.9289 -4.1847 11 1 -0.6904 3.0699 -3.5853 12 6 0.2318 3.3898 -5.4836 13 7 -0.8156 4.0008 -5.9930 14 14 1.7667 3.1465 -6.5201 15 1 1.6753 1.8532 -7.2442 16 1 1.8828 4.2557 -7.5007 17 1 2.9624 3.1373 -5.6394 18 6 3.2875 1.2950 0.8422 19 6 3.7807 -0.0572 1.3610 20 6 3.1520 0.9504 2.3267 21 1 -0.3634 0.5958 0.8373 22 1 -0.3633 0.4274 -0.9346 23 1 -0.3634 -1.0230 0.0972 24 1 2.9868 0.9531 -1.8877 25 1 2.8727 2.6688 -1.4278 26 1 0.4744 2.4908 -1.7790 27 1 1.9252 1.2704 -5.4562 28 1 0.8545 0.3077 -4.4094 29 1 2.5799 0.4747 -4.0051 30 1 -0.7911 4.3247 -6.9070 31 1 4.0406 2.0321 0.5634 32 1 3.1950 -0.9394 1.1026 33 1 4.8581 -0.2096 1.4238 34 1 3.8161 1.4604 3.0245 35 1 2.1529 0.7315 2.7034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393918815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:06 Heat of formation + Delta-G solvation = -37.938801 kcal Electronic energy + Delta-G solvation = -14701.952814 eV Core-core repulsion = 12314.276077 eV Total energy + Delta-G solvation = -2387.676738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.99737 -37.62942 -36.76377 -34.54318 -32.17908 -29.21791 -27.25716 -26.81537 -23.87407 -23.09796 -21.84279 -21.11044 -18.91856 -17.74470 -17.08812 -16.89672 -16.23216 -15.60609 -15.48202 -15.03081 -14.83062 -14.20752 -14.08785 -13.72895 -13.43187 -12.86351 -12.73612 -12.53367 -12.31186 -12.19938 -12.07768 -12.01290 -11.47442 -11.23124 -11.09062 -10.90327 -10.80181 -10.29335 -9.11510 -8.33477 -6.38002 1.29563 1.33322 1.44059 2.28903 2.77261 3.01684 3.12163 3.36662 3.95699 4.03553 4.07576 4.33868 4.36209 4.51304 4.57563 4.62418 4.68398 4.70941 4.81573 4.87006 4.87816 4.92684 5.06177 5.10897 5.13119 5.30086 5.43023 5.47275 5.59916 5.96222 6.38755 6.47927 6.61696 6.80267 7.28864 8.82787 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048805 B = 0.007079 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.569410 B = 3954.313793 C = 4168.031124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.128 3.872 4 H 0.062 0.938 5 C 0.043 3.957 6 N -0.675 5.675 7 C 0.186 3.814 8 H -0.005 1.005 9 C -0.131 4.131 10 C -0.524 4.524 11 H 0.042 0.958 12 C 0.016 3.984 13 N -0.945 5.945 14 Si 0.952 3.048 15 H -0.267 1.267 16 H -0.296 1.296 17 H -0.253 1.253 18 C -0.172 4.172 19 C -0.164 4.164 20 C -0.164 4.164 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.333 0.667 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 -6.444 13.917 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.069 3.931 4 H 0.080 0.920 5 C -0.087 4.087 6 N -0.306 5.306 7 C 0.077 3.923 8 H 0.013 0.987 9 C -0.189 4.189 10 C -0.562 4.562 11 H 0.060 0.940 12 C -0.182 4.182 13 N -0.585 5.585 14 Si 0.779 3.221 15 H -0.193 1.193 16 H -0.224 1.224 17 H -0.177 1.177 18 C -0.191 4.191 19 C -0.201 4.201 20 C -0.201 4.201 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.051 0.949 26 H 0.151 0.849 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.064 -7.206 13.625 17.881 hybrid contribution 0.121 1.323 -0.869 1.587 sum 9.186 -5.883 12.756 16.784 Atomic orbital electron populations 1.22875 0.80399 1.02709 1.00580 1.87790 1.20507 1.27367 1.94910 1.21493 0.93932 0.84919 0.92706 0.91959 1.22527 0.92502 0.99366 0.94298 1.60477 1.13539 1.54321 1.02272 1.19371 0.94027 0.91813 0.87096 0.98724 1.21955 1.00347 0.98945 0.97665 1.21380 1.00233 1.36118 0.98472 0.93968 1.25771 0.99135 0.94269 0.99053 1.70028 1.31678 1.40642 1.16130 0.85808 0.80710 0.77004 0.78588 1.19328 1.22370 1.17687 1.22444 0.98678 1.01617 0.96314 1.22864 1.00931 0.93283 1.03017 1.22978 1.02618 1.03192 0.91311 0.93704 0.93714 0.89286 0.91461 0.94867 0.84938 0.95067 0.93167 0.92987 0.92395 0.86166 0.89011 0.87837 0.87141 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.70 113.37 1.21 2.05 16 2 O -0.39 -11.56 8.67 -148.98 -1.29 -12.85 16 3 C 0.13 3.57 2.74 30.59 0.08 3.65 16 4 H 0.06 1.70 7.64 -2.39 -0.02 1.68 16 5 C 0.04 1.42 5.12 86.31 0.44 1.87 16 6 N -0.68 -27.21 4.79 -495.46 -2.37 -29.58 16 7 C 0.19 8.81 2.19 44.17 0.10 8.90 16 8 H 0.00 -0.23 6.86 -2.39 -0.02 -0.24 16 9 C -0.13 -5.81 8.89 71.98 0.64 -5.17 16 10 C -0.52 -29.81 9.17 25.60 0.23 -29.57 16 11 H 0.04 2.63 7.86 -2.91 -0.02 2.61 16 12 C 0.02 0.91 5.45 84.65 0.46 1.37 16 13 N -0.94 -58.84 13.96 21.45 0.30 -58.55 16 14 Si 0.95 45.38 24.37 68.60 1.67 47.05 16 15 H -0.27 -12.22 6.87 99.48 0.68 -11.54 16 16 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 18 C -0.17 -3.91 5.71 -10.79 -0.06 -3.98 16 19 C -0.16 -3.44 9.87 30.62 0.30 -3.14 16 20 C -0.16 -3.10 10.21 30.62 0.31 -2.79 16 21 H 0.04 1.05 7.97 -2.39 -0.02 1.03 16 22 H 0.04 1.44 6.82 -2.39 -0.02 1.42 16 23 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.07 2.32 7.44 -2.38 -0.02 2.31 16 25 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 26 H 0.33 13.54 8.22 -89.69 -0.74 12.80 16 27 H 0.03 1.39 3.27 -2.39 -0.01 1.38 16 28 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.05 2.01 7.45 -2.39 -0.02 1.99 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.12 2.50 8.10 -2.39 -0.02 2.48 16 32 H 0.09 2.21 7.05 -2.39 -0.02 2.20 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -63.44 278.13 2.28 -61.16 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.24 Total: 19.57 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 3.73 Total: -26.80 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.07 Total: -88.13 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.29 Total: -12.85 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -63.44 2.28 -61.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393918815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.220 kcal (2) G-P(sol) polarization free energy of solvation -63.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds