Wall clock time and date at job start Thu Apr 9 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09004 * 109.47382 * 2 1 4 4 C 1.53003 * 109.47235 * 240.00111 * 2 1 3 5 5 O 1.42901 * 109.46797 * 65.00157 * 4 2 1 6 6 C 1.52997 * 109.47359 * 120.00116 * 2 1 3 7 7 N 1.46900 * 109.47323 * 295.00093 * 6 2 1 8 8 C 1.48558 * 110.99883 * 290.12749 * 7 6 2 9 9 C 1.54383 * 104.59525 * 200.95680 * 8 7 6 10 10 C 1.54266 * 105.05702 * 23.84938 * 9 8 7 11 11 H 1.09000 * 110.32221 * 240.99963 * 10 9 8 12 12 C 1.50702 * 110.32399 * 118.89779 * 10 9 8 13 13 H 1.08002 * 120.00299 * 241.45683 * 12 10 9 14 14 C 1.37884 * 119.99942 * 61.17242 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.48559 * 111.00516 * 174.70196 * 7 6 2 21 21 H 1.09006 * 109.47670 * 299.99889 * 1 2 3 22 22 H 1.09001 * 109.47671 * 59.99899 * 1 2 3 23 23 H 1.09004 * 109.47382 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47383 * 184.99991 * 4 2 1 25 25 H 1.08999 * 109.47434 * 305.00058 * 4 2 1 26 26 H 0.96706 * 113.99636 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47467 * 174.99814 * 6 2 1 28 28 H 1.09004 * 109.47256 * 54.99792 * 6 2 1 29 29 H 1.08997 * 110.41717 * 82.17880 * 8 7 6 30 30 H 1.09004 * 110.40936 * 319.73308 * 8 7 6 31 31 H 1.09001 * 110.32373 * 264.95852 * 9 8 7 32 32 H 1.08998 * 110.32216 * 142.74225 * 9 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.09007 * 110.40823 * 40.26337 * 20 7 6 35 35 H 1.08999 * 110.41202 * 277.82557 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.6619 0.0169 -2.4130 6 6 2.0399 -0.7213 1.2492 7 7 1.6513 0.0373 2.4456 8 6 2.4098 1.3114 2.5378 9 6 2.3211 1.7101 4.0266 10 6 2.0637 0.3891 4.7806 11 1 1.1120 0.4346 5.3099 12 6 3.1862 0.1106 5.7469 13 1 3.7875 -0.7794 5.6341 14 6 3.4492 0.9950 6.7715 15 7 2.7169 2.0788 6.9088 16 14 4.8454 0.6537 7.9645 17 1 6.1270 0.5781 7.2181 18 1 4.9191 1.7476 8.9661 19 1 4.5997 -0.6362 8.6582 20 6 2.0185 -0.6965 3.6840 21 1 -0.3635 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1262 -0.7995 -1.2056 25 1 1.6053 -1.7198 -1.2953 26 1 1.9525 -0.3832 -3.2441 27 1 3.1262 -0.7995 1.2055 28 1 1.6053 -1.7198 1.2951 29 1 1.9482 2.0749 1.9117 30 1 3.4489 1.1571 2.2468 31 1 1.4948 2.4032 4.1844 32 1 3.2594 2.1570 4.3554 33 1 2.9017 2.7008 7.6298 34 1 2.9964 -1.1651 3.5724 35 1 1.2623 -1.4449 3.9208 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397617260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:01 Heat of formation + Delta-G solvation = -62.889109 kcal Electronic energy + Delta-G solvation = -14634.771495 eV Core-core repulsion = 12246.012831 eV Total energy + Delta-G solvation = -2388.758664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.49622 -37.05534 -34.31551 -32.48170 -29.68477 -28.11269 -26.39751 -25.10019 -23.50044 -20.73277 -19.73693 -19.00172 -17.38999 -16.17422 -15.48670 -15.27277 -14.64996 -14.30904 -13.66352 -13.44699 -13.25010 -12.38159 -12.28330 -12.03156 -11.60500 -11.27339 -11.02282 -10.81387 -10.73144 -10.54788 -10.41074 -10.28914 -10.17164 -9.98185 -9.69670 -9.23576 -8.71338 -8.36124 -7.76204 -6.00041 -4.04107 3.31771 3.36835 3.38896 4.09407 4.43941 4.85509 4.98420 5.23587 5.24330 5.32902 5.49083 5.64669 5.79991 5.87534 5.91426 6.10151 6.16875 6.28772 6.34746 6.43675 6.48719 6.58215 6.66077 6.91189 7.15984 7.23091 7.54206 7.59105 7.71127 7.78020 7.91936 8.02531 8.48321 8.98705 9.59722 11.09098 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.066056 B = 0.006116 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.779291 B = 4577.253913 C = 4665.801693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 H 0.076 0.924 4 C 0.080 3.920 5 O -0.572 6.572 6 C 0.051 3.949 7 N -0.512 5.512 8 C 0.031 3.969 9 C -0.091 4.091 10 C 0.048 3.952 11 H 0.033 0.967 12 C -0.517 4.517 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.040 3.960 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.374 0.626 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -4.552 -13.364 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.106 4.106 3 H 0.094 0.906 4 C 0.002 3.998 5 O -0.377 6.377 6 C -0.078 4.078 7 N -0.236 5.236 8 C -0.097 4.097 9 C -0.130 4.130 10 C 0.029 3.971 11 H 0.051 0.949 12 C -0.556 4.556 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.525 5.525 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.087 4.087 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.220 0.780 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.731 -3.912 -12.828 13.523 hybrid contribution 2.023 -0.718 0.291 2.167 sum 0.292 -4.630 -12.537 13.368 Atomic orbital electron populations 1.21618 0.94089 1.01217 1.01945 1.21075 0.97528 1.00321 0.91648 0.90563 1.22245 0.97683 0.94148 0.85716 1.86499 1.81559 1.53354 1.16251 1.22157 0.97406 0.97357 0.90857 1.65322 1.52582 1.04356 1.01293 1.23212 0.94669 0.91878 0.99911 1.22194 1.01264 0.99467 0.90088 1.19360 0.97370 0.89178 0.91168 0.94891 1.21171 1.15509 1.07168 1.11729 0.92840 1.24965 0.96349 0.95151 0.97446 1.69982 1.39101 1.11452 1.31950 0.86703 0.82765 0.77838 0.80932 1.20387 1.21288 1.20282 1.23279 0.97538 0.97755 0.90097 0.91228 0.93147 0.93645 0.94005 0.93785 0.77962 0.95232 0.91393 0.92099 0.95195 0.93646 0.91564 0.92975 0.94812 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.98 37.15 0.33 -1.52 16 2 C -0.09 -1.24 2.63 -90.63 -0.24 -1.47 16 3 H 0.08 1.20 7.05 -51.93 -0.37 0.83 16 4 C 0.08 0.93 6.43 37.16 0.24 1.17 16 5 O -0.57 -6.58 13.19 -35.23 -0.46 -7.04 16 6 C 0.05 0.81 4.20 -3.83 -0.02 0.79 16 7 N -0.51 -9.84 4.82 -229.97 -1.11 -10.95 16 8 C 0.03 0.62 5.74 -2.18 -0.01 0.61 16 9 C -0.09 -2.19 5.75 -25.34 -0.15 -2.34 16 10 C 0.05 1.23 2.99 -90.39 -0.27 0.96 16 11 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.52 -14.24 8.38 -34.44 -0.29 -14.53 16 13 H 0.05 1.45 7.58 -52.49 -0.40 1.05 16 14 C 0.06 1.75 5.08 -17.82 -0.09 1.66 16 15 N -0.89 -25.60 12.34 55.43 0.68 -24.91 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.04 0.87 6.01 -2.19 -0.01 0.86 16 21 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 22 H 0.05 0.69 7.82 -51.93 -0.41 0.29 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.37 2.43 9.12 45.56 0.42 2.84 16 27 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.06 1.14 7.64 -51.93 -0.40 0.74 16 30 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 31 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.73 7.22 -51.93 -0.38 1.35 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.03 0.73 7.56 -51.92 -0.39 0.34 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -29.56 280.14 -7.42 -36.98 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.23 Total: -0.73 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.50 Total: -13.82 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.43 Total: -35.86 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.46 Total: -7.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.56 -7.42 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397617260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.905 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds