Wall clock time and date at job start Thu Apr 9 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09004 * 109.47382 * 2 1 4 4 C 1.53003 * 109.47235 * 240.00111 * 2 1 3 5 5 O 1.42901 * 109.46797 * 65.00157 * 4 2 1 6 6 C 1.52997 * 109.47359 * 120.00116 * 2 1 3 7 7 N 1.46900 * 109.47323 * 295.00093 * 6 2 1 8 8 C 1.48558 * 110.99883 * 290.12749 * 7 6 2 9 9 C 1.54383 * 104.59525 * 200.95680 * 8 7 6 10 10 C 1.54266 * 105.05702 * 23.84938 * 9 8 7 11 11 H 1.09000 * 110.32221 * 240.99963 * 10 9 8 12 12 C 1.50702 * 110.32399 * 118.89779 * 10 9 8 13 13 H 1.08002 * 120.00299 * 241.45683 * 12 10 9 14 14 C 1.37884 * 119.99942 * 61.17242 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.48559 * 111.00516 * 174.70196 * 7 6 2 21 21 H 1.09006 * 109.47670 * 299.99889 * 1 2 3 22 22 H 1.09001 * 109.47671 * 59.99899 * 1 2 3 23 23 H 1.09004 * 109.47382 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47383 * 184.99991 * 4 2 1 25 25 H 1.08999 * 109.47434 * 305.00058 * 4 2 1 26 26 H 0.96706 * 113.99636 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47467 * 174.99814 * 6 2 1 28 28 H 1.09004 * 109.47256 * 54.99792 * 6 2 1 29 29 H 1.08997 * 110.41717 * 82.17880 * 8 7 6 30 30 H 1.09004 * 110.40936 * 319.73308 * 8 7 6 31 31 H 1.09001 * 110.32373 * 264.95852 * 9 8 7 32 32 H 1.08998 * 110.32216 * 142.74225 * 9 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.09007 * 110.40823 * 40.26337 * 20 7 6 35 35 H 1.08999 * 110.41202 * 277.82557 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.6619 0.0169 -2.4130 6 6 2.0399 -0.7213 1.2492 7 7 1.6513 0.0373 2.4456 8 6 2.4098 1.3114 2.5378 9 6 2.3211 1.7101 4.0266 10 6 2.0637 0.3891 4.7806 11 1 1.1120 0.4346 5.3099 12 6 3.1862 0.1106 5.7469 13 1 3.7875 -0.7794 5.6341 14 6 3.4492 0.9950 6.7715 15 7 2.7169 2.0788 6.9088 16 14 4.8454 0.6537 7.9645 17 1 6.1270 0.5781 7.2181 18 1 4.9191 1.7476 8.9661 19 1 4.5997 -0.6362 8.6582 20 6 2.0185 -0.6965 3.6840 21 1 -0.3635 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1262 -0.7995 -1.2056 25 1 1.6053 -1.7198 -1.2953 26 1 1.9525 -0.3832 -3.2441 27 1 3.1262 -0.7995 1.2055 28 1 1.6053 -1.7198 1.2951 29 1 1.9482 2.0749 1.9117 30 1 3.4489 1.1571 2.2468 31 1 1.4948 2.4032 4.1844 32 1 3.2594 2.1570 4.3554 33 1 2.9017 2.7008 7.6298 34 1 2.9964 -1.1651 3.5724 35 1 1.2623 -1.4449 3.9208 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397617260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:01 Heat of formation + Delta-G solvation = -84.339783 kcal Electronic energy + Delta-G solvation = -14635.701666 eV Core-core repulsion = 12246.012831 eV Total energy + Delta-G solvation = -2389.688835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00034 -38.15099 -35.75575 -34.26860 -31.39173 -29.93001 -27.50589 -26.76757 -25.13617 -22.22565 -21.41592 -20.53977 -18.47460 -18.04345 -16.84932 -16.70399 -16.45529 -15.76570 -15.05424 -14.85470 -14.58713 -14.05280 -13.66486 -13.51469 -13.13496 -12.95836 -12.70966 -12.54569 -12.48247 -12.10155 -11.84150 -11.75751 -11.66420 -11.45715 -11.12666 -10.83197 -10.78690 -10.47609 -9.31485 -8.12962 -6.24416 1.41748 1.43045 1.50805 2.42483 3.02477 3.17861 3.58883 3.94002 4.05455 4.19922 4.25532 4.37310 4.50786 4.54728 4.61269 4.68360 4.69016 4.81138 4.89570 5.00153 5.05458 5.18739 5.26602 5.33055 5.39320 5.51191 5.61013 5.77082 5.88041 5.97903 6.28318 6.40898 6.86644 6.96683 7.43459 8.95925 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.066056 B = 0.006116 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.779291 B = 4577.253913 C = 4665.801693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 H 0.059 0.941 4 C 0.086 3.914 5 O -0.590 6.590 6 C 0.052 3.948 7 N -0.514 5.514 8 C 0.044 3.956 9 C -0.085 4.085 10 C 0.038 3.962 11 H -0.002 1.002 12 C -0.535 4.535 13 H 0.055 0.945 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.053 3.947 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.397 0.603 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -5.828 -14.719 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 H 0.078 0.922 4 C 0.008 3.992 5 O -0.399 6.399 6 C -0.076 4.076 7 N -0.238 5.238 8 C -0.084 4.084 9 C -0.123 4.123 10 C 0.019 3.981 11 H 0.016 0.984 12 C -0.573 4.573 13 H 0.073 0.927 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.075 4.075 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.246 0.754 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.936 -5.206 -14.216 15.168 hybrid contribution 1.729 -0.314 0.676 1.883 sum 0.793 -5.520 -13.540 14.643 Atomic orbital electron populations 1.21553 0.94144 1.01672 1.00973 1.21027 0.97423 0.99581 0.92438 0.92241 1.22119 0.98251 0.94252 0.84613 1.86435 1.81917 1.54142 1.17368 1.22235 0.97903 0.97751 0.89712 1.65298 1.52561 1.04088 1.01857 1.23046 0.95405 0.92880 0.97020 1.21987 0.99012 0.98410 0.92939 1.19345 0.95058 0.91473 0.92213 0.98424 1.21514 1.16046 1.07240 1.12485 0.92681 1.25773 0.98772 0.94888 0.99208 1.70116 1.40695 1.12323 1.32597 0.85649 0.79752 0.77828 0.78650 1.19573 1.21039 1.19496 1.23043 0.97943 0.96646 0.89856 0.93334 0.92939 0.92467 0.93003 0.92033 0.75377 0.94750 0.89806 0.90519 0.94615 0.95311 0.94262 0.93024 0.94737 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.98 71.98 0.65 -2.67 16 2 C -0.09 -2.24 2.63 -10.80 -0.03 -2.26 16 3 H 0.06 1.75 7.05 -2.39 -0.02 1.74 16 4 C 0.09 1.71 6.43 71.98 0.46 2.17 16 5 O -0.59 -11.83 13.19 -148.98 -1.97 -13.79 16 6 C 0.05 1.52 4.20 86.30 0.36 1.88 16 7 N -0.51 -19.15 4.82 -881.50 -4.25 -23.40 16 8 C 0.04 1.75 5.74 86.45 0.50 2.25 16 9 C -0.08 -4.17 5.75 31.49 0.18 -3.99 16 10 C 0.04 1.98 2.99 -10.64 -0.03 1.95 16 11 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 12 C -0.53 -29.75 8.38 25.60 0.21 -29.54 16 13 H 0.05 2.97 7.58 -2.91 -0.02 2.95 16 14 C 0.01 0.71 5.08 84.66 0.43 1.14 16 15 N -0.92 -54.25 12.34 21.45 0.26 -53.98 16 16 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 C 0.05 2.22 6.01 86.45 0.52 2.74 16 21 H 0.05 1.47 7.75 -2.38 -0.02 1.45 16 22 H 0.05 1.34 7.82 -2.39 -0.02 1.33 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.40 3.87 9.12 -74.05 -0.68 3.20 16 27 H 0.03 0.99 7.88 -2.39 -0.02 0.97 16 28 H 0.08 2.20 8.13 -2.39 -0.02 2.18 16 29 H 0.08 2.80 7.64 -2.39 -0.02 2.78 16 30 H 0.04 1.37 7.82 -2.38 -0.02 1.35 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 2.10 7.22 -2.39 -0.02 2.08 16 33 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 34 H 0.03 1.44 7.56 -2.38 -0.02 1.43 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -63.45 280.14 -0.30 -63.75 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.37 Total: 7.99 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.25 Total: -26.32 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -3.99 Total: -77.38 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.97 Total: -13.79 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.45 -0.30 -63.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397617260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.589 kcal (2) G-P(sol) polarization free energy of solvation -63.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds