Wall clock time and date at job start Thu Apr 9 2020 14:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99610 * 2 1 4 4 H 1.09003 * 109.46914 * 30.00826 * 3 2 1 5 5 C 1.53010 * 109.46820 * 150.00428 * 3 2 1 6 6 N 1.46501 * 109.46832 * 300.00081 * 5 3 2 7 7 C 1.46504 * 119.99949 * 269.99983 * 6 5 3 8 8 C 1.36934 * 120.00193 * 89.99998 * 6 5 3 9 9 H 1.08001 * 120.00112 * 336.91113 * 8 6 5 10 10 C 1.38814 * 120.00016 * 157.18589 * 8 6 5 11 11 N 1.31621 * 119.99878 * 156.13998 * 10 8 6 12 12 Si 1.86793 * 119.99958 * 336.13528 * 10 8 6 13 13 H 1.48506 * 109.46749 * 84.84610 * 12 10 8 14 14 H 1.48500 * 109.47179 * 204.84368 * 12 10 8 15 15 H 1.48497 * 109.47654 * 324.84774 * 12 10 8 16 16 C 1.52995 * 109.47444 * 270.00266 * 3 2 1 17 17 C 1.53774 * 113.61632 * 157.49858 * 16 3 2 18 18 C 1.53774 * 87.08223 * 220.01940 * 17 16 3 19 19 C 1.53773 * 87.08126 * 25.43128 * 18 17 16 20 20 H 1.08999 * 109.46715 * 299.99236 * 1 2 3 21 21 H 1.08993 * 109.47544 * 59.99670 * 1 2 3 22 22 H 1.09003 * 109.46662 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47009 * 180.02562 * 5 3 2 24 24 H 1.08993 * 109.46831 * 59.99973 * 5 3 2 25 25 H 1.08995 * 109.46899 * 274.38391 * 7 6 5 26 26 H 1.08997 * 109.46992 * 34.38731 * 7 6 5 27 27 H 1.08996 * 109.47079 * 154.39017 * 7 6 5 28 28 H 0.96996 * 119.99822 * 179.97438 * 11 10 8 29 29 H 1.09007 * 112.85125 * 288.80863 * 16 3 2 30 30 H 1.09000 * 113.61743 * 334.56824 * 17 16 3 31 31 H 1.09003 * 113.61545 * 105.46817 * 17 16 3 32 32 H 1.09001 * 113.61717 * 270.88376 * 18 17 16 33 33 H 1.09004 * 113.69181 * 139.99422 * 18 17 16 34 34 H 1.09002 * 113.61653 * 220.01693 * 19 18 17 35 35 H 1.09002 * 113.61536 * 89.11694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5140 5 6 3.3590 1.2633 0.7212 6 7 3.1604 0.8171 2.1024 7 6 2.9029 1.7984 3.1594 8 6 3.2154 -0.5171 2.4055 9 1 3.0313 -1.2535 1.6372 10 6 3.5023 -0.9232 3.7016 11 7 3.1124 -2.1081 4.1215 12 14 4.4417 0.2120 4.8496 13 1 3.4940 1.1510 5.5019 14 1 5.1325 -0.5947 5.8875 15 1 5.4454 0.9823 4.0722 16 6 2.2176 1.7716 -1.4424 17 6 2.3075 3.2996 -1.5892 18 6 1.4684 3.1473 -2.8688 19 6 0.9162 1.8486 -2.2580 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.8021 2.2592 0.7216 24 1 4.0241 0.5695 0.2073 25 1 3.8505 2.1800 3.5394 26 1 2.3153 2.6224 2.7547 27 1 2.3514 1.3226 3.9703 28 1 3.3132 -2.3920 5.0270 29 1 3.0195 1.2348 -1.9495 30 1 1.7978 3.8454 -0.7952 31 1 3.3194 3.6620 -1.7711 32 1 2.0659 2.9881 -3.7664 33 1 0.7156 3.9256 -2.9941 34 1 0.8046 1.0395 -2.9798 35 1 0.0260 1.9976 -1.6468 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595307381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:02 Heat of formation + Delta-G solvation = 2.282096 kcal Electronic energy + Delta-G solvation = -15134.505701 eV Core-core repulsion = 12748.573073 eV Total energy + Delta-G solvation = -2385.932629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.33018 -36.53605 -35.29550 -31.60135 -29.75700 -26.14277 -25.97505 -25.45778 -25.03361 -21.94086 -20.18186 -19.30951 -16.72656 -16.04833 -15.66853 -15.09265 -14.86576 -14.47221 -13.60491 -13.37670 -13.09466 -12.58821 -12.35638 -12.02709 -11.95475 -11.84264 -11.47085 -11.17754 -10.77763 -10.66459 -10.36231 -10.18103 -10.05933 -9.95500 -9.91314 -9.35518 -8.79338 -8.38883 -6.86210 -5.79079 -3.10075 3.42812 3.57994 3.60990 4.37323 4.68226 4.72083 4.81726 4.85310 5.07366 5.17270 5.51967 5.57611 5.64832 5.72021 5.83730 5.89422 5.93164 5.97359 6.03437 6.12780 6.18122 6.20875 6.29135 6.34669 6.38463 6.53504 6.63074 6.75588 6.84890 7.96033 8.13848 8.52865 9.13271 9.90625 10.20477 11.37486 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045993 B = 0.008866 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.646894 B = 3157.526933 C = 3534.673054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.081 3.919 4 H 0.048 0.952 5 C 0.154 3.846 6 N -0.606 5.606 7 C 0.103 3.897 8 C -0.241 4.241 9 H 0.094 0.906 10 C 0.016 3.984 11 N -0.910 5.910 12 Si 0.881 3.119 13 H -0.290 1.290 14 H -0.307 1.307 15 H -0.281 1.281 16 C -0.130 4.130 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.137 4.137 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.006 0.994 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.259 0.741 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 10.509 -11.128 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.020 3.980 4 H 0.066 0.934 5 C 0.027 3.973 6 N -0.329 5.329 7 C -0.042 4.042 8 C -0.370 4.370 9 H 0.111 0.889 10 C -0.181 4.181 11 N -0.554 5.554 12 Si 0.713 3.287 13 H -0.217 1.217 14 H -0.235 1.235 15 H -0.207 1.207 16 C -0.149 4.149 17 C -0.172 4.172 18 C -0.180 4.180 19 C -0.175 4.175 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.941 10.212 -10.973 15.499 hybrid contribution 0.286 0.835 0.792 1.186 sum -3.655 11.047 -10.181 15.461 Atomic orbital electron populations 1.22797 0.83170 1.01888 0.98750 1.88056 1.17800 1.26716 1.94519 1.22933 0.97832 0.84883 0.92326 0.93399 1.20890 0.92927 0.97956 0.85565 1.44118 1.82584 1.04035 1.02129 1.21386 0.97277 0.92586 0.92947 1.19034 1.40565 0.81220 0.96157 0.88854 1.25181 1.00345 0.95679 0.96929 1.69899 1.47285 1.20919 1.17326 0.87090 0.81326 0.79843 0.80468 1.21737 1.23548 1.20696 1.23102 0.98385 0.95861 0.97588 1.22893 1.00235 0.96311 0.97726 1.22832 0.99563 0.98098 0.97535 1.22972 0.97755 0.97500 0.99248 0.94861 0.94794 0.90624 0.93170 0.92037 0.97578 0.95403 0.92145 0.93111 0.88899 0.90333 0.91537 0.90470 0.91962 0.91668 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 101.05 1.07 1.59 16 2 O -0.35 -7.22 9.31 -35.23 -0.33 -7.55 16 3 C 0.08 1.44 2.30 -26.73 -0.06 1.38 16 4 H 0.05 0.85 7.59 -51.93 -0.39 0.46 16 5 C 0.15 3.11 5.43 -4.04 -0.02 3.09 16 6 N -0.61 -14.98 2.68 -181.12 -0.49 -15.46 16 7 C 0.10 2.35 8.33 59.85 0.50 2.85 16 8 C -0.24 -7.02 9.47 -15.06 -0.14 -7.16 16 9 H 0.09 2.95 7.73 -52.49 -0.41 2.55 16 10 C 0.02 0.48 5.16 -17.43 -0.09 0.39 16 11 N -0.91 -28.91 13.97 55.49 0.78 -28.14 16 12 Si 0.88 23.29 24.04 -169.99 -4.09 19.20 16 13 H -0.29 -7.33 6.36 56.52 0.36 -6.97 16 14 H -0.31 -8.24 7.11 56.52 0.40 -7.84 16 15 H -0.28 -7.36 6.91 56.52 0.39 -6.97 16 16 C -0.13 -1.83 3.35 -89.82 -0.30 -2.13 16 17 C -0.13 -1.58 7.63 -25.93 -0.20 -1.78 16 18 C -0.14 -1.51 8.08 -25.93 -0.21 -1.72 16 19 C -0.14 -1.69 6.18 -25.93 -0.16 -1.85 16 20 H 0.03 0.56 8.08 -51.93 -0.42 0.15 16 21 H 0.03 0.47 4.95 -51.93 -0.26 0.21 16 22 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 23 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 24 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 25 H 0.01 0.15 5.80 -51.93 -0.30 -0.15 16 26 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.06 1.48 5.73 -51.93 -0.30 1.19 16 28 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.98 6.33 -51.93 -0.33 0.65 16 LS Contribution 272.43 15.07 4.11 4.11 Total: -1.00 -32.15 272.43 -5.44 -37.58 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -5.80 Total: -4.40 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 0.38 Total: -5.34 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.29 Total: -43.60 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.33 Total: -7.55 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.09 Total: 19.20 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.15 -5.44 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.866 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds