Wall clock time and date at job start Thu Apr 9 2020 14:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47178 * 2 1 4 4 C 1.46905 * 110.99572 * 300.40791 * 3 2 1 5 5 C 1.50704 * 109.46826 * 291.57315 * 4 3 2 6 6 H 1.07995 * 120.00185 * 4.42922 * 5 4 3 7 7 C 1.37875 * 119.99719 * 184.42522 * 5 4 3 8 8 N 1.31514 * 119.99906 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00272 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47042 * 89.99918 * 9 7 5 11 11 H 1.48499 * 109.47358 * 210.00280 * 9 7 5 12 12 H 1.48497 * 109.47074 * 330.00103 * 9 7 5 13 13 C 1.46898 * 111.00066 * 64.35705 * 3 2 1 14 14 C 1.52998 * 109.47123 * 75.99025 * 13 3 2 15 15 O 1.42899 * 112.84920 * 50.40789 * 14 13 3 16 16 C 1.53787 * 113.61528 * 279.10675 * 14 13 3 17 17 C 1.53774 * 87.08037 * 220.01838 * 16 14 13 18 18 C 1.53777 * 113.61513 * 181.61045 * 14 13 3 19 19 H 1.09008 * 109.46976 * 182.13066 * 1 2 3 20 20 H 1.08993 * 109.47272 * 302.13221 * 1 2 3 21 21 H 1.09002 * 109.47260 * 62.13303 * 1 2 3 22 22 H 1.09003 * 109.47644 * 239.99915 * 2 1 3 23 23 H 1.09001 * 109.47292 * 119.99939 * 2 1 3 24 24 H 1.08997 * 109.47584 * 51.57641 * 4 3 2 25 25 H 1.09008 * 109.46665 * 171.58213 * 4 3 2 26 26 H 0.97000 * 119.99805 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47373 * 195.99105 * 13 3 2 28 28 H 1.09004 * 109.46826 * 315.99016 * 13 3 2 29 29 H 0.96693 * 114.00360 * 309.66812 * 15 14 13 30 30 H 1.09000 * 113.61264 * 334.56807 * 16 14 13 31 31 H 1.08999 * 113.61765 * 105.46700 * 16 14 13 32 32 H 1.09003 * 113.61535 * 270.88008 * 17 16 14 33 33 H 1.09005 * 113.69267 * 139.99133 * 17 16 14 34 34 H 1.09001 * 113.61222 * 254.52806 * 18 14 13 35 35 H 1.08996 * 113.61718 * 25.34575 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5406 2.1127 -1.1829 5 6 2.1993 1.5533 -2.4175 6 1 2.8479 0.6932 -2.3410 7 6 1.9738 2.1396 -3.6449 8 7 2.5482 1.6512 -4.7224 9 14 0.8523 3.6277 -3.7773 10 1 1.6529 4.8672 -3.6103 11 1 0.1975 3.6371 -5.1100 12 1 -0.1849 3.5617 -2.7166 13 6 1.6356 2.0792 1.2363 14 6 2.5321 1.6103 2.3841 15 8 3.9230 1.6705 2.0619 16 6 2.0973 0.2684 2.9966 17 6 2.4431 0.8721 4.3680 18 6 2.1850 2.2511 3.7382 19 1 -0.3633 -1.0270 0.0382 20 1 -0.3633 0.5465 0.8702 21 1 -0.3634 0.4804 -0.9085 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.4596 2.0006 -1.2653 25 1 1.7901 3.1693 -1.0850 26 1 2.3898 2.0639 -5.5858 27 1 1.7518 3.1544 1.1005 28 1 0.5956 1.8531 1.4719 29 1 4.1509 1.2484 1.2224 30 1 1.0364 0.0535 2.8691 31 1 2.7365 -0.5681 2.7141 32 1 3.4799 0.7150 4.6654 33 1 1.7334 0.6109 5.1531 34 1 2.8950 3.0153 4.0544 35 1 1.1484 2.5796 3.8129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610710260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:20 Heat of formation + Delta-G solvation = -22.663778 kcal Electronic energy + Delta-G solvation = -15124.634931 eV Core-core repulsion = 12737.620568 eV Total energy + Delta-G solvation = -2387.014363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.67848 -36.68396 -34.13645 -32.51681 -29.88268 -28.67798 -25.94665 -25.42322 -23.30787 -21.99256 -19.39321 -19.25465 -16.85214 -16.11769 -15.51027 -15.04770 -14.87833 -14.37031 -14.10685 -13.27303 -13.02413 -12.49046 -12.32057 -12.23192 -12.07359 -11.52182 -11.23410 -11.09496 -10.87171 -10.83261 -10.65885 -10.57361 -10.24933 -9.91905 -9.66804 -9.38061 -9.11537 -8.57235 -7.40336 -6.06167 -4.02948 3.27243 3.34816 3.36090 4.38824 4.40787 4.57797 4.73999 4.92324 5.08462 5.25708 5.28686 5.65364 5.68627 5.74444 5.76625 5.81157 5.87684 5.97052 6.03291 6.06919 6.18940 6.33244 6.41628 6.49851 6.53401 6.77078 6.91419 7.04063 7.58097 7.86678 8.00396 8.19753 8.63857 9.01951 9.55788 11.07006 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044590 B = 0.008198 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.787461 B = 3414.493280 C = 3498.740008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 N -0.525 5.525 4 C 0.159 3.841 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.026 3.974 14 C 0.124 3.876 15 O -0.545 6.545 16 C -0.165 4.165 17 C -0.135 4.135 18 C -0.131 4.131 19 H 0.050 0.950 20 H 0.045 0.955 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.062 0.938 24 H -0.005 1.005 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.392 0.608 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 -1.201 14.456 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.077 4.077 3 N -0.249 5.249 4 C 0.033 3.967 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.103 4.103 14 C 0.082 3.918 15 O -0.353 6.353 16 C -0.203 4.203 17 C -0.172 4.172 18 C -0.169 4.169 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.013 0.987 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.243 0.757 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.935 -0.867 14.778 15.091 hybrid contribution -1.589 0.583 -0.802 1.873 sum -4.524 -0.284 13.976 14.693 Atomic orbital electron populations 1.22384 0.99468 1.01102 1.01831 1.22174 0.92237 0.91088 1.02175 1.62057 1.59223 1.02080 1.01494 1.20247 0.94060 0.93688 0.88701 1.21006 1.28595 1.15637 0.89213 0.90190 1.24888 0.95685 0.96968 0.95781 1.69890 1.43939 1.41299 0.98820 0.86886 0.81561 0.83966 0.77461 1.20166 1.21243 1.19431 1.22733 0.96683 0.99258 0.91592 1.22009 0.82726 0.94576 0.92485 1.86249 1.21883 1.81990 1.45184 1.23675 1.01484 0.98525 0.96624 1.22748 1.01545 0.96427 0.96525 1.23014 1.01516 0.97491 0.94844 0.93111 0.93639 0.91547 0.89754 0.91951 0.98724 0.96052 0.92689 0.91093 0.94045 0.75677 0.89925 0.91022 0.90086 0.91964 0.90872 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.27 37.16 0.34 -2.80 16 2 C 0.05 0.92 5.65 -3.82 -0.02 0.90 16 3 N -0.53 -10.39 3.79 -236.06 -0.90 -11.28 16 4 C 0.16 3.76 3.57 -4.97 -0.02 3.74 16 5 C -0.51 -14.08 9.18 -34.44 -0.32 -14.39 16 6 H 0.08 2.41 7.35 -52.49 -0.39 2.02 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.87 21.45 27.38 -169.99 -4.65 16.80 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.38 6.67 56.52 0.38 -6.00 16 13 C 0.03 0.44 4.62 -3.83 -0.02 0.43 16 14 C 0.12 1.86 1.42 -89.81 -0.13 1.73 16 15 O -0.55 -9.18 13.41 -35.23 -0.47 -9.65 16 16 C -0.17 -2.15 5.30 -25.92 -0.14 -2.29 16 17 C -0.14 -1.58 8.02 -25.92 -0.21 -1.79 16 18 C -0.13 -1.66 7.47 -25.92 -0.19 -1.85 16 19 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 20 H 0.04 0.69 6.13 -51.93 -0.32 0.37 16 21 H 0.07 1.27 6.34 -51.93 -0.33 0.94 16 22 H 0.08 1.72 6.95 -51.93 -0.36 1.36 16 23 H 0.06 0.98 5.16 -51.93 -0.27 0.71 16 24 H 0.00 -0.11 5.29 -51.93 -0.27 -0.39 16 25 H 0.02 0.52 6.95 -51.92 -0.36 0.16 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 28 H 0.04 0.66 5.65 -51.93 -0.29 0.37 16 29 H 0.39 6.54 8.27 45.56 0.38 6.91 16 30 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 31 H 0.07 0.95 7.62 -51.93 -0.40 0.55 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -29.57 269.75 -6.67 -36.24 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.69 Total: 4.90 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -0.79 Total: -14.46 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.12 Total: -37.90 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.47 Total: -9.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.65 Total: 16.80 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.57 -6.67 -36.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.580 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds