Wall clock time and date at job start Thu Apr 9 2020 14:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47178 * 2 1 4 4 C 1.46905 * 110.99572 * 300.40791 * 3 2 1 5 5 C 1.50704 * 109.46826 * 291.57315 * 4 3 2 6 6 H 1.07995 * 120.00185 * 4.42922 * 5 4 3 7 7 C 1.37875 * 119.99719 * 184.42522 * 5 4 3 8 8 N 1.31514 * 119.99906 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00272 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47042 * 89.99918 * 9 7 5 11 11 H 1.48499 * 109.47358 * 210.00280 * 9 7 5 12 12 H 1.48497 * 109.47074 * 330.00103 * 9 7 5 13 13 C 1.46898 * 111.00066 * 64.35705 * 3 2 1 14 14 C 1.52998 * 109.47123 * 75.99025 * 13 3 2 15 15 O 1.42899 * 112.84920 * 50.40789 * 14 13 3 16 16 C 1.53787 * 113.61528 * 279.10675 * 14 13 3 17 17 C 1.53774 * 87.08037 * 220.01838 * 16 14 13 18 18 C 1.53777 * 113.61513 * 181.61045 * 14 13 3 19 19 H 1.09008 * 109.46976 * 182.13066 * 1 2 3 20 20 H 1.08993 * 109.47272 * 302.13221 * 1 2 3 21 21 H 1.09002 * 109.47260 * 62.13303 * 1 2 3 22 22 H 1.09003 * 109.47644 * 239.99915 * 2 1 3 23 23 H 1.09001 * 109.47292 * 119.99939 * 2 1 3 24 24 H 1.08997 * 109.47584 * 51.57641 * 4 3 2 25 25 H 1.09008 * 109.46665 * 171.58213 * 4 3 2 26 26 H 0.97000 * 119.99805 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47373 * 195.99105 * 13 3 2 28 28 H 1.09004 * 109.46826 * 315.99016 * 13 3 2 29 29 H 0.96693 * 114.00360 * 309.66812 * 15 14 13 30 30 H 1.09000 * 113.61264 * 334.56807 * 16 14 13 31 31 H 1.08999 * 113.61765 * 105.46700 * 16 14 13 32 32 H 1.09003 * 113.61535 * 270.88008 * 17 16 14 33 33 H 1.09005 * 113.69267 * 139.99133 * 17 16 14 34 34 H 1.09001 * 113.61222 * 254.52806 * 18 14 13 35 35 H 1.08996 * 113.61718 * 25.34575 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5406 2.1127 -1.1829 5 6 2.1993 1.5533 -2.4175 6 1 2.8479 0.6932 -2.3410 7 6 1.9738 2.1396 -3.6449 8 7 2.5482 1.6512 -4.7224 9 14 0.8523 3.6277 -3.7773 10 1 1.6529 4.8672 -3.6103 11 1 0.1975 3.6371 -5.1100 12 1 -0.1849 3.5617 -2.7166 13 6 1.6356 2.0792 1.2363 14 6 2.5321 1.6103 2.3841 15 8 3.9230 1.6705 2.0619 16 6 2.0973 0.2684 2.9966 17 6 2.4431 0.8721 4.3680 18 6 2.1850 2.2511 3.7382 19 1 -0.3633 -1.0270 0.0382 20 1 -0.3633 0.5465 0.8702 21 1 -0.3634 0.4804 -0.9085 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.4596 2.0006 -1.2653 25 1 1.7901 3.1693 -1.0850 26 1 2.3898 2.0639 -5.5858 27 1 1.7518 3.1544 1.1005 28 1 0.5956 1.8531 1.4719 29 1 4.1509 1.2484 1.2224 30 1 1.0364 0.0535 2.8691 31 1 2.7365 -0.5681 2.7141 32 1 3.4799 0.7150 4.6654 33 1 1.7334 0.6109 5.1531 34 1 2.8950 3.0153 4.0544 35 1 1.1484 2.5796 3.8129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610710260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:16 Heat of formation + Delta-G solvation = -44.427995 kcal Electronic energy + Delta-G solvation = -15125.578699 eV Core-core repulsion = 12737.620568 eV Total energy + Delta-G solvation = -2387.958130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -40.87196 -38.17194 -35.34409 -34.66119 -31.37668 -30.41608 -27.35113 -26.58989 -24.81077 -23.52277 -20.83962 -20.47690 -18.91525 -17.42615 -16.89622 -16.66350 -16.15955 -15.87307 -15.62876 -14.71245 -14.65401 -14.16514 -13.69337 -13.50775 -13.28418 -13.20476 -12.76455 -12.59548 -12.39279 -12.29837 -12.01496 -11.91961 -11.72026 -11.52006 -11.44100 -10.85645 -10.76121 -10.43019 -8.96870 -8.27441 -6.29273 1.33826 1.34002 1.44481 2.33760 3.04820 3.17200 3.28156 3.67970 3.89694 3.97057 4.08637 4.30375 4.38678 4.51047 4.53801 4.67315 4.76296 4.79334 4.84086 4.86965 4.97920 5.05773 5.08088 5.17669 5.27654 5.39458 5.44331 5.50793 5.57497 5.99789 6.39625 6.64786 6.76798 6.90656 7.33712 8.89147 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044590 B = 0.008198 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.787461 B = 3414.493280 C = 3498.740008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.170 3.830 5 C -0.509 4.509 6 H 0.040 0.960 7 C 0.007 3.993 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.252 1.252 13 C 0.029 3.971 14 C 0.109 3.891 15 O -0.559 6.559 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.127 4.127 19 H 0.072 0.928 20 H 0.066 0.934 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.089 0.911 24 H -0.002 1.002 25 H 0.019 0.981 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.389 0.611 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -0.566 16.691 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.074 4.074 3 N -0.261 5.261 4 C 0.043 3.957 5 C -0.547 4.547 6 H 0.058 0.942 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.175 1.175 13 C -0.099 4.099 14 C 0.067 3.933 15 O -0.367 6.367 16 C -0.200 4.200 17 C -0.163 4.163 18 C -0.164 4.164 19 H 0.091 0.909 20 H 0.084 0.916 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.108 0.892 24 H 0.016 0.984 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.673 -0.239 17.049 17.679 hybrid contribution -0.980 0.301 -1.462 1.786 sum -5.653 0.062 15.587 16.580 Atomic orbital electron populations 1.22302 0.97898 1.02606 1.01257 1.22142 0.93515 0.89990 1.01765 1.61912 1.59921 1.02764 1.01506 1.19980 0.93616 0.93506 0.88641 1.21253 1.27769 1.14373 0.91323 0.94190 1.25798 0.97469 1.00360 0.95329 1.70045 1.46055 1.43312 0.99549 0.85778 0.79774 0.79784 0.77980 1.19407 1.20810 1.17543 1.22801 0.98140 0.98403 0.90584 1.22314 0.81438 0.96851 0.92705 1.86245 1.23350 1.82171 1.44930 1.23670 1.02083 0.97113 0.97104 1.22694 1.01916 0.95236 0.96429 1.23093 1.02566 0.97919 0.92851 0.90880 0.91555 0.94349 0.93275 0.89248 0.98402 0.96324 0.92557 0.92109 0.92304 0.76134 0.88606 0.91504 0.90680 0.89500 0.91337 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 9.27 71.98 0.67 -5.00 16 2 C 0.05 1.89 5.65 86.30 0.49 2.38 16 3 N -0.54 -20.98 3.79 -900.77 -3.42 -24.39 16 4 C 0.17 7.97 3.57 85.56 0.31 8.27 16 5 C -0.51 -29.10 9.18 25.60 0.24 -28.86 16 6 H 0.04 2.54 7.35 -2.91 -0.02 2.52 16 7 C 0.01 0.43 5.47 84.65 0.46 0.90 16 8 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 9 Si 0.94 44.25 27.38 68.60 1.88 46.13 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.25 -10.99 6.67 99.48 0.66 -10.32 16 13 C 0.03 0.92 4.62 86.30 0.40 1.32 16 14 C 0.11 3.02 1.42 -10.27 -0.01 3.01 16 15 O -0.56 -18.42 13.41 -148.98 -2.00 -20.42 16 16 C -0.16 -3.70 5.30 31.12 0.16 -3.54 16 17 C -0.13 -2.50 8.02 31.12 0.25 -2.25 16 18 C -0.13 -2.81 7.47 31.12 0.23 -2.57 16 19 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 20 H 0.07 1.78 6.13 -2.39 -0.01 1.76 16 21 H 0.04 1.40 6.34 -2.39 -0.02 1.39 16 22 H 0.05 2.07 6.95 -2.39 -0.02 2.05 16 23 H 0.09 2.65 5.16 -2.39 -0.01 2.64 16 24 H 0.00 -0.07 5.29 -2.39 -0.01 -0.09 16 25 H 0.02 0.89 6.95 -2.38 -0.02 0.87 16 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.06 2.04 7.69 -2.39 -0.02 2.02 16 28 H 0.06 1.66 5.65 -2.39 -0.01 1.65 16 29 H 0.39 13.06 8.27 -74.06 -0.61 12.45 16 30 H 0.10 1.96 7.96 -2.39 -0.02 1.94 16 31 H 0.07 1.60 7.62 -2.39 -0.02 1.58 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -64.79 269.75 0.37 -64.42 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.42 Total: 19.74 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 3.19 Total: -26.35 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.12 Total: -83.51 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -2.00 Total: -20.42 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -64.79 0.37 -64.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.988 kcal (2) G-P(sol) polarization free energy of solvation -64.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds