Wall clock time and date at job start Thu Apr 9 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.28219 * 299.33321 * 9 7 2 11 11 C 1.54457 * 110.32070 * 177.11184 * 9 7 2 12 12 O 1.44833 * 102.89615 * 219.29917 * 11 9 7 13 13 C 1.44388 * 103.23664 * 36.61276 * 12 11 9 14 14 H 1.08996 * 110.11530 * 79.95129 * 13 12 11 15 15 C 1.52994 * 110.16794 * 201.57395 * 13 12 11 16 16 H 1.09002 * 110.27282 * 177.40500 * 15 13 12 17 17 C 1.54946 * 110.31001 * 299.60341 * 15 13 12 18 18 C 1.55301 * 100.94175 * 155.36034 * 17 15 13 19 19 C 1.54379 * 102.25585 * 325.86649 * 18 17 15 20 20 O 1.43245 * 107.58700 * 21.35945 * 19 18 17 21 21 O 1.43792 * 106.16791 * 320.77608 * 13 12 11 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 110.72447 * 337.65037 * 11 9 7 24 24 H 1.08993 * 110.72864 * 100.94362 * 11 9 7 25 25 H 1.08999 * 111.12442 * 273.27926 * 17 15 13 26 26 H 1.09000 * 111.12427 * 37.44375 * 17 15 13 27 27 H 1.09001 * 110.85071 * 207.67618 * 18 17 15 28 28 H 1.09001 * 110.84842 * 84.05646 * 18 17 15 29 29 H 1.08997 * 109.83102 * 261.84348 * 19 18 17 30 30 H 1.09005 * 109.83090 * 140.86919 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6281 -2.5757 0.8917 11 6 2.2358 -3.6869 -0.0718 12 8 1.5628 -4.6110 -0.9611 13 6 0.9316 -3.7414 -1.9255 14 1 1.6587 -3.4168 -2.6698 15 6 -0.2310 -4.4655 -2.6073 16 1 -0.7374 -3.7959 -3.3025 17 6 0.2810 -5.7264 -3.3481 18 6 -1.0064 -6.5944 -3.3772 19 6 -1.6813 -6.2245 -2.0389 20 8 -1.1567 -4.9574 -1.6252 21 8 0.4432 -2.6098 -1.1850 22 1 -0.4850 -0.8401 -0.0004 23 1 3.1902 -3.3716 -0.4934 24 1 2.3761 -4.1322 0.9131 25 1 0.6127 -5.4816 -4.3572 26 1 1.0738 -6.2184 -2.7845 27 1 -0.7585 -7.6554 -3.4063 28 1 -1.6405 -6.3198 -4.2202 29 1 -1.4540 -6.9816 -1.2884 30 1 -2.7601 -6.1509 -2.1766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258889503.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:48 Heat of formation + Delta-G solvation = -143.510756 kcal Electronic energy + Delta-G solvation = -15045.715225 eV Core-core repulsion = 12419.908787 eV Total energy + Delta-G solvation = -2625.806438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67401 -38.30367 -34.07974 -32.59855 -31.92989 -30.38918 -28.09885 -24.54262 -23.90237 -21.62522 -21.17500 -20.66124 -17.28452 -16.70412 -16.19929 -15.57927 -15.02991 -14.81729 -13.93396 -13.76517 -13.65091 -13.07377 -12.71112 -12.28588 -11.61943 -11.59919 -11.44307 -11.21085 -11.08051 -10.77201 -10.70194 -10.45378 -10.06793 -9.40307 -9.33165 -9.01533 -8.49412 -8.02153 -6.39608 -4.20809 3.42176 3.44207 3.63323 4.04746 4.42849 4.50199 4.59124 4.72012 4.96820 5.21475 5.38739 5.42183 5.62195 5.68024 5.76081 5.82615 5.89868 5.99790 6.01340 6.06087 6.20686 6.25509 6.41204 6.74564 7.25493 7.39773 7.99623 8.15798 8.42227 8.82098 9.64265 11.02024 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.057771 B = 0.008194 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.556083 B = 3416.354575 C = 3573.448400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 1.071 2.929 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.629 4.629 8 H 0.056 0.944 9 C 0.167 3.833 10 H 0.043 0.957 11 C 0.029 3.971 12 O -0.390 6.390 13 C 0.232 3.768 14 H 0.068 0.932 15 C 0.085 3.915 16 H 0.082 0.918 17 C -0.148 4.148 18 C -0.153 4.153 19 C 0.049 3.951 20 O -0.357 6.357 21 O -0.377 6.377 22 H 0.282 0.718 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -10.550 -6.027 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.898 3.102 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.666 4.666 8 H 0.074 0.926 9 C 0.112 3.888 10 H 0.061 0.939 11 C -0.047 4.047 12 O -0.311 6.311 13 C 0.136 3.864 14 H 0.085 0.915 15 C 0.027 3.973 16 H 0.100 0.900 17 C -0.186 4.186 18 C -0.191 4.191 19 C -0.028 4.028 20 O -0.276 6.276 21 O -0.298 6.298 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.055 -8.916 -5.874 10.678 hybrid contribution 0.473 -1.779 -0.225 1.855 sum 0.527 -10.696 -6.099 12.324 Atomic orbital electron populations 1.70652 1.06935 1.32027 1.42313 1.25882 0.96518 1.02700 0.92418 0.83546 0.74919 0.75171 0.76549 1.20601 1.21357 1.21286 1.22124 0.93949 0.91358 1.59175 0.92568 1.21223 0.88345 0.94005 0.85237 0.93910 1.24271 0.96883 0.89896 0.93663 1.89246 1.68519 1.30705 1.42590 1.24098 0.90125 0.81436 0.90727 0.91516 1.23263 0.89334 0.94885 0.89781 0.90011 1.23242 0.98401 0.95744 1.01199 1.23095 0.96960 1.00787 0.98269 1.23090 0.97648 0.86877 0.95199 1.88590 1.60072 1.34215 1.44757 1.89091 1.58580 1.45356 1.36774 0.90648 0.91838 0.89714 0.90059 0.89445 0.90258 0.90749 0.91719 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.56 55.43 0.75 -26.97 16 2 C 0.03 0.99 5.42 -17.82 -0.10 0.90 16 3 Si 1.07 25.20 29.90 -169.99 -5.08 20.12 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.63 -18.05 8.78 -34.44 -0.30 -18.36 16 8 H 0.06 1.55 7.57 -52.48 -0.40 1.16 16 9 C 0.17 4.50 3.13 -27.12 -0.08 4.42 16 10 H 0.04 1.23 8.04 -51.93 -0.42 0.81 16 11 C 0.03 0.66 7.35 37.92 0.28 0.93 16 12 O -0.39 -8.59 10.65 -63.80 -0.68 -9.27 16 13 C 0.23 5.12 3.74 37.15 0.14 5.26 16 14 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 15 C 0.09 1.58 3.57 -25.71 -0.09 1.49 16 16 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.15 -2.07 6.52 -24.48 -0.16 -2.23 16 18 C -0.15 -1.81 7.02 -24.79 -0.17 -1.98 16 19 C 0.05 0.71 7.79 37.88 0.30 1.01 16 20 O -0.36 -7.21 10.85 -53.23 -0.58 -7.79 16 21 O -0.38 -10.24 9.75 -62.54 -0.61 -10.85 16 22 H 0.28 9.06 6.57 -40.82 -0.27 8.79 16 23 H 0.06 1.37 7.70 -51.93 -0.40 0.97 16 24 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.29 7.46 -51.93 -0.39 0.91 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 251.81 15.07 3.79 3.79 Total: -1.00 -33.10 251.81 -6.65 -39.75 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.05 Total: -0.21 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.20 Total: -8.56 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.75 Total: -26.97 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.87 Total: -27.91 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.10 -6.65 -39.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258889503.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.765 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds