Wall clock time and date at job start Thu Apr 9 2020 14:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.54812 * 299.99803 * 9 7 2 11 11 C 1.53153 * 109.54825 * 60.18314 * 9 7 2 12 12 C 1.53039 * 109.36778 * 178.27253 * 11 9 7 13 13 O 1.42985 * 109.47006 * 300.88044 * 12 11 9 14 14 C 1.42951 * 113.79788 * 59.28355 * 13 12 11 15 15 C 1.52938 * 113.29372 * 172.31556 * 14 13 12 16 16 S 1.81437 * 89.87227 * 211.74201 * 15 14 13 17 17 C 1.52964 * 113.23561 * 71.69943 * 14 13 12 18 18 C 1.53155 * 112.28222 * 302.11235 * 14 13 12 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.48659 * 298.24113 * 11 9 7 21 21 H 1.08998 * 109.48124 * 58.28418 * 11 9 7 22 22 H 1.08999 * 109.47377 * 60.87540 * 12 11 9 23 23 H 1.08994 * 109.47176 * 180.87881 * 12 11 9 24 24 H 1.09007 * 113.15043 * 326.99202 * 15 14 13 25 25 H 1.08997 * 113.15387 * 96.48574 * 15 14 13 26 26 H 1.08993 * 113.15138 * 263.55829 * 17 14 13 27 27 H 1.08996 * 113.15237 * 33.01362 * 17 14 13 28 28 H 1.09006 * 109.49470 * 294.77951 * 18 14 13 29 29 H 1.08996 * 109.64657 * 174.42014 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6243 -2.5584 0.8893 11 6 0.3729 -2.5838 -1.2524 12 6 -0.3574 -3.9286 -1.2701 13 8 0.5998 -4.9908 -1.2645 14 6 1.4678 -4.9791 -0.1288 15 6 2.3596 -6.2181 -0.0364 16 16 2.3206 -6.1062 1.7741 17 6 0.7687 -5.3864 1.1693 18 6 2.2454 -3.6653 -0.0057 19 1 -0.4850 0.8401 0.0004 20 1 -0.3567 -1.7740 -1.2403 21 1 0.9977 -2.4972 -2.1413 22 1 -0.9935 -4.0083 -0.3886 23 1 -0.9709 -3.9971 -2.1683 24 1 1.8819 -7.1196 -0.4204 25 1 3.3543 -6.0624 -0.4540 26 1 0.4324 -4.5347 1.7604 27 1 -0.0175 -6.1261 1.0188 28 1 2.9235 -3.5632 -0.8531 29 1 2.8159 -3.6628 0.9230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259648837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:57 Heat of formation + Delta-G solvation = -48.899400 kcal Electronic energy + Delta-G solvation = -12996.667305 eV Core-core repulsion = 10817.716395 eV Total energy + Delta-G solvation = -2178.950910 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 214.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.81428 -36.05665 -35.54881 -33.09260 -29.62370 -27.40571 -27.26235 -24.25766 -22.49649 -20.10411 -18.46488 -17.85282 -16.81184 -16.61958 -16.19357 -15.92127 -15.32954 -14.76079 -14.23845 -14.07487 -13.76570 -13.38519 -12.86327 -12.76259 -12.53780 -12.35991 -12.03618 -11.92268 -11.66855 -11.51538 -10.99365 -10.85844 -10.44851 -10.23978 -8.77123 -8.10105 -6.23393 0.74168 0.86075 1.42553 1.42713 1.50409 2.42887 2.76230 3.17014 3.40839 3.67877 3.95912 4.32220 4.36252 4.44896 4.52480 4.55867 4.64781 4.69800 4.82903 4.90396 5.18155 5.20892 5.49885 5.60164 5.94230 5.99519 6.29881 6.36573 6.86221 7.44570 8.93902 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.043690 B = 0.009643 C = 0.008620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.719406 B = 2902.874946 C = 3247.663731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.048 3.952 10 H 0.001 0.999 11 C -0.139 4.139 12 C 0.067 3.933 13 O -0.370 6.370 14 C 0.112 3.888 15 C -0.054 4.054 16 S -0.299 6.299 17 C -0.100 4.100 18 C -0.108 4.108 19 H 0.261 0.739 20 H 0.073 0.927 21 H 0.034 0.966 22 H 0.046 0.954 23 H 0.105 0.895 24 H 0.131 0.869 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.061 0.939 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -9.765 -1.235 9.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.069 0.931 9 C 0.030 3.970 10 H 0.019 0.981 11 C -0.178 4.178 12 C -0.009 4.009 13 O -0.290 6.290 14 C 0.070 3.930 15 C -0.202 4.202 16 S -0.074 6.074 17 C -0.249 4.249 18 C -0.146 4.146 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.123 0.877 24 H 0.149 0.851 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.079 0.921 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.380 -10.095 -0.164 10.190 hybrid contribution -0.359 1.633 -0.558 1.762 sum 1.021 -8.462 -0.723 8.554 Atomic orbital electron populations 1.69968 1.06986 1.27250 1.51207 1.25676 0.95688 1.02152 0.94746 0.85726 0.78508 0.79374 0.78752 1.20885 1.19908 1.19712 1.21504 0.93040 0.92090 1.50732 0.93094 1.18613 0.92940 0.92057 0.93384 0.98137 1.22074 1.00211 0.96959 0.98528 1.22675 0.90150 0.86165 1.01931 1.87867 1.47415 1.50142 1.43531 1.22754 0.90077 0.95347 0.84834 1.24471 1.04103 1.00599 0.91061 1.88800 1.25614 1.81681 1.11272 1.25146 0.98100 1.03483 0.98140 1.21936 0.98276 0.92399 1.01969 0.92943 0.90811 0.94706 0.93558 0.87655 0.85072 0.87071 0.89664 0.85604 0.92080 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 11.36 21.45 0.24 -51.20 15 2 C 0.02 0.89 5.31 84.66 0.45 1.34 15 3 Si 0.95 43.12 29.54 68.60 2.03 45.15 15 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.54 -29.13 8.57 25.60 0.22 -28.91 15 8 H 0.05 2.74 7.75 -2.91 -0.02 2.72 15 9 C 0.05 2.35 2.07 -11.41 -0.02 2.33 15 10 H 0.00 0.03 7.33 -2.38 -0.02 0.01 15 11 C -0.14 -6.34 5.13 30.66 0.16 -6.19 15 12 C 0.07 2.42 6.71 72.00 0.48 2.91 15 13 O -0.37 -12.87 10.51 -148.98 -1.57 -14.44 15 14 C 0.11 3.75 1.09 -10.77 -0.01 3.74 15 15 C -0.05 -1.47 7.37 71.96 0.53 -0.94 15 16 S -0.30 -9.14 23.72 -56.49 -1.34 -10.48 15 17 C -0.10 -3.13 6.64 71.97 0.48 -2.65 15 18 C -0.11 -4.37 4.39 30.73 0.13 -4.24 15 19 H 0.26 14.06 8.31 -92.71 -0.77 13.29 15 20 H 0.07 3.77 6.14 -2.39 -0.01 3.75 15 21 H 0.03 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.05 1.64 7.73 -2.39 -0.02 1.62 15 23 H 0.11 3.27 8.14 -2.39 -0.02 3.25 15 24 H 0.13 2.95 8.14 -2.38 -0.02 2.93 15 25 H 0.11 2.77 8.12 -2.39 -0.02 2.75 15 26 H 0.08 2.97 7.27 -2.39 -0.02 2.96 15 27 H 0.13 3.35 8.14 -2.39 -0.02 3.33 15 28 H 0.06 2.49 8.14 -2.38 -0.02 2.47 15 29 H 0.07 2.95 7.18 -2.39 -0.02 2.93 15 Total: -1.00 -57.60 244.25 2.91 -54.69 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.13 Total: 8.90 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 2.42 Total: -32.62 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.24 Total: -51.20 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.57 Total: -14.44 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.34 Total: -10.48 kcal Total: -57.60 2.91 -54.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.790 kcal (2) G-P(sol) polarization free energy of solvation -57.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds