Wall clock time and date at job start Thu Apr 9 2020 14:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39140 * 119.10970 * 2 1 4 4 C 1.36862 * 119.90719 * 180.02562 * 3 2 1 5 5 C 1.40543 * 117.91735 * 0.02562 * 4 3 2 6 6 C 1.40580 * 122.37720 * 180.02562 * 5 4 3 7 7 C 1.38051 * 119.47269 * 179.97438 * 6 5 4 8 8 N 1.31636 * 122.54240 * 359.73321 * 7 6 5 9 9 C 1.33562 * 122.50013 * 0.54506 * 8 7 6 10 10 C 1.40428 * 120.46849 * 179.74250 * 9 8 7 11 11 H 1.08001 * 119.99717 * 179.72013 * 10 9 8 12 12 C 1.40369 * 119.99659 * 359.72984 * 10 9 8 13 13 N 1.30574 * 120.00413 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99444 * 180.27105 * 12 10 9 15 15 H 1.48498 * 109.46908 * 269.72209 * 14 12 10 16 16 H 1.48497 * 109.46933 * 29.72260 * 14 12 10 17 17 H 1.48500 * 109.46636 * 149.72366 * 14 12 10 18 18 C 1.41725 * 119.09643 * 0.02562 * 5 4 3 19 19 N 1.31526 * 119.10788 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.47320 * 89.99686 * 1 2 3 21 21 H 1.08999 * 109.46781 * 209.99787 * 1 2 3 22 22 H 1.08999 * 109.47061 * 329.99222 * 1 2 3 23 23 H 1.08000 * 120.04503 * 0.02682 * 3 2 1 24 24 H 1.08002 * 121.03870 * 180.02562 * 4 3 2 25 25 H 1.07995 * 120.26014 * 359.97438 * 6 5 4 26 26 H 1.07996 * 118.72821 * 179.97438 * 7 6 5 27 27 H 0.97005 * 119.99970 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1840 1.2157 0.0000 4 6 3.5524 1.2347 -0.0005 5 6 4.2277 0.0021 -0.0016 6 6 5.6306 -0.0877 -0.0017 7 6 6.2317 -1.3305 -0.0023 8 7 5.5410 -2.4511 0.0024 9 6 4.2055 -2.4710 -0.0026 10 6 3.5116 -3.6918 -0.0027 11 1 2.4316 -3.6991 -0.0022 12 6 4.2217 -4.9027 -0.0032 13 7 5.5274 -4.8939 -0.0041 14 14 3.2985 -6.5267 -0.0110 15 1 3.0545 -6.9640 1.3870 16 1 1.9996 -6.3543 -0.7096 17 1 4.1078 -7.5526 -0.7165 18 6 3.4727 -1.1973 -0.0027 19 7 2.1469 -1.1491 -0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6302 2.1429 0.0004 24 1 4.0964 2.1677 -0.0001 25 1 6.2333 0.8084 -0.0013 26 1 7.3102 -1.3855 -0.0027 27 1 6.0181 -5.7307 -0.0048 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259669223.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:59 Heat of formation + Delta-G solvation = 26.701234 kcal Electronic energy + Delta-G solvation = -13365.276659 eV Core-core repulsion = 11086.452838 eV Total energy + Delta-G solvation = -2278.823821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21452 -38.36728 -35.86414 -33.91319 -32.92066 -31.15453 -29.21467 -27.25012 -24.64073 -23.40323 -22.63541 -19.84167 -18.33222 -17.86075 -17.05168 -16.61635 -15.39993 -15.22844 -15.02732 -14.48506 -14.06873 -13.98762 -13.56107 -13.05424 -13.03759 -12.95076 -12.74260 -12.47586 -12.34451 -11.95604 -11.49757 -10.95976 -10.18482 -9.72356 -9.56944 -9.10591 -8.52601 -6.62076 -0.03392 0.36020 1.23983 1.37206 1.53973 1.61185 2.14529 2.50692 2.88870 3.62822 3.87150 4.01104 4.14194 4.27706 4.29559 4.49469 4.72411 4.83104 4.86813 4.91782 5.04379 5.22841 5.25361 5.31908 5.39378 5.72230 5.91815 6.07093 6.17228 6.42769 6.69417 7.43075 8.07564 8.20605 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.011269 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.207889 B = 2484.190018 C = 3377.251003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.047 3.953 3 C -0.141 4.141 4 C -0.123 4.123 5 C -0.048 4.048 6 C -0.356 4.356 7 C 0.135 3.865 8 N -0.558 5.558 9 C 0.232 3.768 10 C -0.375 4.375 11 H 0.101 0.899 12 C 0.011 3.989 13 N -0.714 5.714 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.254 1.254 17 H -0.257 1.257 18 C -0.008 4.008 19 N -0.465 5.465 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.098 0.902 23 H 0.167 0.833 24 H 0.153 0.847 25 H 0.125 0.875 26 H 0.139 0.861 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 4.424 -0.016 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.161 4.161 4 C -0.149 4.149 5 C -0.054 4.054 6 C -0.381 4.381 7 C -0.023 4.023 8 N -0.275 5.275 9 C 0.104 3.896 10 C -0.405 4.405 11 H 0.119 0.881 12 C -0.215 4.215 13 N -0.333 5.333 14 Si 0.818 3.182 15 H -0.180 1.180 16 H -0.177 1.177 17 H -0.181 1.181 18 C -0.141 4.141 19 N -0.175 5.175 20 H 0.097 0.903 21 H 0.080 0.920 22 H 0.116 0.884 23 H 0.185 0.815 24 H 0.171 0.829 25 H 0.143 0.857 26 H 0.156 0.844 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.509 2.695 -0.016 6.133 hybrid contribution 0.345 1.045 -0.008 1.100 sum -5.164 3.739 -0.024 6.376 Atomic orbital electron populations 1.20608 0.86754 1.03584 1.03144 1.21955 0.98528 0.88317 1.01314 1.21936 0.94594 0.99541 1.00021 1.21507 0.95068 0.96674 1.01675 1.18996 0.95544 0.94094 0.96719 1.21285 0.92893 0.98373 1.25549 1.22656 0.99767 0.88829 0.91088 1.68612 1.06281 1.27585 1.24992 1.20128 0.88516 0.90670 0.90268 1.20266 0.95878 0.89906 1.34436 0.88148 1.27397 0.95894 1.05251 0.92999 1.70130 1.09117 1.30980 1.23053 0.84941 0.79029 0.74162 0.80104 1.18032 1.17700 1.18110 1.21199 0.89993 0.95016 1.07861 1.67282 1.09090 1.30440 1.10660 0.90287 0.92032 0.88367 0.81534 0.82923 0.85717 0.84411 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.34 10.14 71.24 0.72 -1.62 15 2 C 0.05 1.85 6.78 42.82 0.29 2.14 15 3 C -0.14 -4.84 9.64 22.16 0.21 -4.63 15 4 C -0.12 -4.77 9.96 22.51 0.22 -4.55 15 5 C -0.05 -2.34 5.75 -21.28 -0.12 -2.46 15 6 C -0.36 -16.91 9.91 22.80 0.23 -16.68 15 7 C 0.13 6.88 11.08 84.68 0.94 7.82 15 8 N -0.56 -32.33 7.86 -184.96 -1.45 -33.78 15 9 C 0.23 13.58 6.73 41.70 0.28 13.86 15 10 C -0.37 -20.76 9.01 23.32 0.21 -20.55 15 11 H 0.10 5.40 7.47 -2.91 -0.02 5.38 15 12 C 0.01 0.54 5.50 85.40 0.47 1.01 15 13 N -0.71 -37.18 11.49 21.90 0.25 -36.93 15 14 Si 1.00 36.53 29.56 68.60 2.03 38.56 15 15 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 16 H -0.25 -9.09 7.11 99.48 0.71 -8.38 15 17 H -0.26 -8.69 7.11 99.48 0.71 -7.99 15 18 C -0.01 -0.46 6.78 42.16 0.29 -0.17 15 19 N -0.46 -23.12 9.58 -171.91 -1.65 -24.76 15 20 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.10 2.02 8.07 -2.39 -0.02 2.00 15 23 H 0.17 3.97 8.06 -2.91 -0.02 3.94 15 24 H 0.15 4.73 8.06 -2.91 -0.02 4.71 15 25 H 0.12 5.03 8.06 -2.91 -0.02 5.00 15 26 H 0.14 6.13 8.06 -2.91 -0.02 6.11 15 27 H 0.29 13.36 8.29 -92.70 -0.77 12.59 15 Total: -1.00 -67.98 243.44 4.10 -63.89 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.18 Total: 18.86 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.74 Total: -25.83 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.85 Total: -95.48 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -67.98 4.10 -63.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669223.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.588 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds