Wall clock time and date at job start Thu Apr 9 2020 14:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31724 * 120.11063 * 2 1 4 4 C 1.32353 * 122.79352 * 179.97438 * 3 2 1 5 5 C 1.36624 * 121.82263 * 0.02867 * 4 3 2 6 6 C 1.40306 * 118.41679 * 0.24789 * 5 4 3 7 7 C 1.40506 * 123.22549 * 180.38093 * 6 5 4 8 8 C 1.38069 * 119.31876 * 179.70395 * 7 6 5 9 9 N 1.31673 * 122.68782 * 359.65936 * 8 7 6 10 10 C 1.33676 * 122.53388 * 0.02592 * 9 8 7 11 11 C 1.40501 * 120.57510 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00148 * 221.49808 * 11 10 9 13 13 C 1.40362 * 119.99927 * 41.48756 * 11 10 9 14 14 N 1.30567 * 119.99998 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99690 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47310 * 90.00213 * 15 13 11 17 17 H 1.48498 * 109.47011 * 210.00083 * 15 13 11 18 18 H 1.48497 * 109.47496 * 330.00448 * 15 13 11 19 19 C 1.39272 * 120.11032 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46654 * 97.99159 * 1 2 3 21 21 H 1.08997 * 109.47524 * 217.99220 * 1 2 3 22 22 H 1.09004 * 109.47041 * 337.99520 * 1 2 3 23 23 H 1.07999 * 119.08985 * 180.02562 * 4 3 2 24 24 H 1.07999 * 120.78712 * 179.97438 * 5 4 3 25 25 H 1.08002 * 120.33727 * 359.36258 * 7 6 5 26 26 H 1.07999 * 118.65975 * 179.67588 * 8 7 6 27 27 H 0.96998 * 119.99579 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1395 0.0000 4 6 3.4899 1.2014 0.0005 5 6 4.2638 0.0756 0.0005 6 6 3.6252 -1.1737 -0.0054 7 6 4.3212 -2.3942 0.0018 8 6 3.6104 -3.5779 0.0013 9 7 2.2942 -3.6170 0.0010 10 6 1.5422 -2.5119 0.0005 11 6 0.1400 -2.6016 0.0007 12 1 -0.4437 -1.9373 -0.6193 13 6 -0.5021 -3.5547 0.8065 14 7 0.2035 -4.3576 1.5563 15 14 -2.3662 -3.6744 0.8061 16 1 -2.8006 -4.6325 -0.2421 17 1 -2.8320 -4.1488 2.1340 18 1 -2.9481 -2.3372 0.5261 19 6 2.2056 -1.2048 0.0005 20 1 -0.3633 -0.1429 -1.0177 21 1 -0.3634 -0.8099 0.6326 22 1 -0.3633 0.9528 0.3851 23 1 3.9702 2.1687 0.0009 24 1 5.3415 0.1456 0.0005 25 1 5.4011 -2.4064 0.0020 26 1 4.1561 -4.5098 0.0016 27 1 -0.2403 -5.0160 2.1134 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259721242.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:03 Heat of formation + Delta-G solvation = 51.908784 kcal Electronic energy + Delta-G solvation = -13650.344839 eV Core-core repulsion = 11372.614099 eV Total energy + Delta-G solvation = -2277.730740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.65429 -36.65383 -34.40227 -32.47524 -30.90132 -29.32592 -27.17788 -25.99536 -22.75302 -22.37799 -20.40937 -18.18008 -16.32976 -15.85118 -15.51880 -15.22718 -13.98468 -13.76522 -13.34143 -12.92968 -12.71154 -12.11798 -11.95905 -11.73915 -11.55399 -11.26214 -11.12066 -10.87005 -10.40041 -10.06395 -9.41748 -8.95484 -8.72871 -8.17148 -7.66982 -7.11655 -6.94787 -4.79727 1.53456 2.19137 2.81030 2.93274 2.96014 3.12605 3.70139 4.24560 4.62279 5.19452 5.46348 5.59433 5.81214 5.98605 6.08289 6.09618 6.35607 6.38354 6.42467 6.63556 6.74627 6.86776 6.90321 7.02781 7.05883 7.49111 7.58762 7.80423 7.91338 8.27051 8.48912 9.00760 9.78251 9.95122 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.012440 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.811992 B = 2250.308463 C = 2977.466708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.196 3.804 3 N -0.551 5.551 4 C 0.098 3.902 5 C -0.227 4.227 6 C 0.050 3.950 7 C -0.337 4.337 8 C 0.162 3.838 9 N -0.537 5.537 10 C 0.311 3.689 11 C -0.419 4.419 12 H 0.112 0.888 13 C 0.073 3.927 14 N -0.733 5.733 15 Si 0.916 3.084 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.253 1.253 19 C -0.209 4.209 20 H 0.072 0.928 21 H 0.115 0.885 22 H 0.054 0.946 23 H 0.133 0.867 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 2.649 -0.807 2.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.053 3.947 3 N -0.264 5.264 4 C -0.050 4.050 5 C -0.249 4.249 6 C 0.041 3.959 7 C -0.361 4.361 8 C 0.003 3.997 9 N -0.251 5.251 10 C 0.179 3.821 11 C -0.449 4.449 12 H 0.129 0.871 13 C -0.154 4.154 14 N -0.354 5.354 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.198 1.198 18 H -0.177 1.177 19 C -0.215 4.215 20 H 0.090 0.910 21 H 0.133 0.867 22 H 0.073 0.927 23 H 0.151 0.849 24 H 0.135 0.865 25 H 0.121 0.879 26 H 0.137 0.863 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.700 2.483 -0.629 3.074 hybrid contribution 0.671 -0.133 0.117 0.694 sum -1.029 2.351 -0.511 2.616 Atomic orbital electron populations 1.21466 0.89405 1.03513 1.02957 1.21171 0.96315 0.87258 0.89983 1.67314 1.09521 1.29549 1.20015 1.21880 0.89662 0.97408 0.96033 1.21466 0.99700 0.92941 1.10776 1.17956 0.92418 0.93763 0.91774 1.21116 0.98436 0.92518 1.24029 1.22258 0.91479 0.95829 0.90129 1.68425 1.04586 1.30571 1.21495 1.19657 0.93353 0.84360 0.84748 1.19948 0.90328 1.14223 1.20426 0.87091 1.26157 1.01602 0.93209 0.94394 1.69729 1.38744 1.11690 1.15224 0.86164 0.80557 0.80480 0.78950 1.18790 1.19756 1.17662 1.20901 0.93667 0.96582 1.10346 0.90976 0.86667 0.92672 0.84909 0.86544 0.87885 0.86270 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.30 36.00 0.30 -1.99 15 2 C 0.20 4.51 6.84 -82.26 -0.56 3.95 15 3 N -0.55 -12.25 10.23 -9.53 -0.10 -12.35 15 4 C 0.10 1.99 11.08 -17.91 -0.20 1.79 15 5 C -0.23 -4.75 9.94 -39.39 -0.39 -5.15 15 6 C 0.05 1.20 5.75 -106.83 -0.61 0.58 15 7 C -0.34 -7.72 9.95 -38.79 -0.39 -8.11 15 8 C 0.16 3.86 11.07 -17.68 -0.20 3.67 15 9 N -0.54 -14.25 9.05 -9.86 -0.09 -14.34 15 10 C 0.31 8.09 6.30 -82.85 -0.52 7.57 15 11 C -0.42 -10.02 6.17 -37.93 -0.23 -10.26 15 12 H 0.11 2.40 5.05 -52.49 -0.26 2.13 15 13 C 0.07 1.67 5.46 -17.29 -0.09 1.58 15 14 N -0.73 -18.14 12.35 55.57 0.69 -17.45 15 15 Si 0.92 16.64 29.56 -169.99 -5.03 11.62 15 16 H -0.26 -4.79 7.11 56.52 0.40 -4.38 15 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 18 H -0.25 -4.36 7.11 56.52 0.40 -3.96 15 19 C -0.21 -5.23 5.91 -104.71 -0.62 -5.85 15 20 H 0.07 1.30 7.40 -51.93 -0.38 0.91 15 21 H 0.12 2.34 5.11 -51.93 -0.27 2.07 15 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.13 2.18 8.06 -52.49 -0.42 1.76 15 24 H 0.12 2.08 8.06 -52.49 -0.42 1.66 15 25 H 0.10 2.08 8.06 -52.49 -0.42 1.65 15 26 H 0.12 2.46 8.06 -52.49 -0.42 2.04 15 27 H 0.29 6.37 8.29 -40.82 -0.34 6.03 15 LS Contribution 235.51 15.07 3.55 3.55 Total: -1.00 -28.55 235.51 -6.66 -35.21 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.16 Total: 5.98 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -3.52 Total: -12.21 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.50 Total: -44.14 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.62 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.55 -6.66 -35.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721242.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.118 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds