Wall clock time and date at job start Thu Apr 9 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39163 * 120.04169 * 2 1 4 4 N 1.31331 * 121.72479 * 180.23368 * 3 2 1 5 5 C 1.33345 * 121.08573 * 359.48254 * 4 3 2 6 6 C 1.40875 * 122.04896 * 180.23214 * 5 4 3 7 7 C 1.37887 * 119.59084 * 180.27389 * 6 5 4 8 8 N 1.31665 * 122.75537 * 0.02562 * 7 6 5 9 9 C 1.33644 * 122.28797 * 359.97438 * 8 7 6 10 10 C 1.40495 * 120.52854 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99988 * 179.97438 * 10 9 8 12 12 C 1.40379 * 119.99632 * 0.02562 * 10 9 8 13 13 N 1.30562 * 120.00399 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99602 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47134 * 90.00148 * 14 12 10 16 16 H 1.48502 * 109.46951 * 209.99762 * 14 12 10 17 17 H 1.48496 * 109.47338 * 329.99904 * 14 12 10 18 18 C 1.41711 * 119.98053 * 0.50892 * 5 4 3 19 19 C 1.37161 * 120.03612 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47237 * 270.02387 * 1 2 3 21 21 H 1.08994 * 109.46909 * 30.02332 * 1 2 3 22 22 H 1.08997 * 109.47255 * 150.02377 * 1 2 3 23 23 H 1.08004 * 119.13561 * 359.97398 * 3 2 1 24 24 H 1.07997 * 120.20046 * 0.29304 * 6 5 4 25 25 H 1.08002 * 118.61740 * 179.97438 * 7 6 5 26 26 H 0.96997 * 120.00077 * 180.02562 * 13 12 10 27 27 H 1.07995 * 120.99604 * 0.04786 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2037 1.2047 0.0000 4 7 3.5165 1.2433 -0.0046 5 6 4.2382 0.1220 0.0009 6 6 5.6469 0.1398 0.0010 7 6 6.3428 -1.0506 0.0011 8 7 5.7464 -2.2244 0.0006 9 6 4.4158 -2.3492 0.0004 10 6 3.8182 -3.6207 0.0004 11 1 2.7421 -3.7116 0.0007 12 6 4.6200 -4.7730 0.0011 13 7 5.9210 -4.6631 0.0012 14 14 3.8254 -6.4636 0.0018 15 1 3.6151 -6.9123 -1.3981 16 1 4.7122 -7.4270 0.7024 17 1 2.5174 -6.3956 0.7016 18 6 3.5894 -1.1378 0.0009 19 6 2.1936 -1.1874 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 1.6503 2.1322 -0.0004 24 1 6.1783 1.0799 0.0014 25 1 7.4223 -1.0187 0.0008 26 1 6.4749 -5.4594 0.0013 27 1 1.6706 -2.1323 0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727823.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:05 Heat of formation + Delta-G solvation = 42.757767 kcal Electronic energy + Delta-G solvation = -13357.539586 eV Core-core repulsion = 11079.412028 eV Total energy + Delta-G solvation = -2278.127558 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.52677 -36.59668 -34.11339 -32.78730 -30.88855 -29.55948 -27.06610 -25.43721 -23.32843 -21.72300 -20.82627 -18.15477 -16.69598 -15.74375 -15.57660 -14.97770 -13.68343 -13.64257 -13.29761 -12.92197 -12.54122 -12.35369 -12.04177 -11.81853 -11.66750 -11.43182 -11.07500 -11.05183 -10.60628 -10.33596 -9.65937 -9.13678 -8.49161 -7.98157 -7.73497 -7.28640 -6.75862 -4.84227 1.69630 2.07716 2.79168 2.88248 2.91962 3.24334 3.64290 4.23825 4.68217 5.30959 5.50949 5.59801 5.71765 5.84284 5.98740 6.02549 6.05679 6.19581 6.27489 6.49525 6.64878 6.77786 7.03326 7.07754 7.13325 7.40821 7.59161 7.80496 7.94307 8.18848 8.55682 9.03023 9.80060 10.03679 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.031008 B = 0.011085 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.775561 B = 2525.281157 C = 3412.912381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.228 4.228 3 C 0.132 3.868 4 N -0.518 5.518 5 C 0.201 3.799 6 C -0.344 4.344 7 C 0.169 3.831 8 N -0.531 5.531 9 C 0.268 3.732 10 C -0.374 4.374 11 H 0.094 0.906 12 C 0.057 3.943 13 N -0.675 5.675 14 Si 0.917 3.083 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.256 1.256 18 C -0.205 4.205 19 C -0.018 4.018 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.136 0.864 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.283 0.717 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -0.254 0.009 5.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.232 4.232 3 C -0.038 4.038 4 N -0.228 5.228 5 C 0.075 3.925 6 C -0.370 4.370 7 C 0.008 3.992 8 N -0.246 5.246 9 C 0.140 3.860 10 C -0.403 4.403 11 H 0.112 0.888 12 C -0.173 4.173 13 N -0.294 5.294 14 Si 0.739 3.261 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.180 1.180 18 C -0.211 4.211 19 C -0.044 4.044 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.154 0.846 24 H 0.121 0.879 25 H 0.138 0.862 26 H 0.095 0.905 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.691 -0.343 0.006 4.704 hybrid contribution -1.159 -0.600 0.007 1.305 sum -5.850 -0.943 0.012 5.926 Atomic orbital electron populations 1.20478 0.91683 1.01591 1.01047 1.20243 0.96354 0.94392 1.12178 1.22480 0.90488 0.96292 0.94493 1.67983 1.06836 1.30745 1.17235 1.18641 0.94143 0.87233 0.92444 1.20853 0.91384 0.98427 1.26325 1.22248 0.98756 0.88369 0.89813 1.68690 1.09286 1.23129 1.23493 1.19758 0.87912 0.90300 0.88078 1.19843 0.95106 0.89299 1.36098 0.88755 1.26306 0.94848 1.02064 0.94087 1.70052 1.05012 1.31741 1.22570 0.86145 0.80384 0.79751 0.79784 1.18830 1.19526 1.18005 1.20793 0.94327 0.96114 1.09854 1.20995 0.93199 0.97271 0.92953 0.92542 0.92532 0.92447 0.84649 0.87857 0.86186 0.90544 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 10.01 36.01 0.36 -0.92 15 2 C -0.23 -4.36 5.87 -104.67 -0.61 -4.97 15 3 C 0.13 2.64 10.81 -17.42 -0.19 2.45 15 4 N -0.52 -12.25 10.38 -10.96 -0.11 -12.37 15 5 C 0.20 5.12 6.63 -84.89 -0.56 4.56 15 6 C -0.34 -8.53 10.11 -38.71 -0.39 -8.92 15 7 C 0.17 4.20 11.06 -17.75 -0.20 4.00 15 8 N -0.53 -14.41 7.89 -9.90 -0.08 -14.49 15 9 C 0.27 7.12 6.73 -82.84 -0.56 6.57 15 10 C -0.37 -9.17 8.87 -37.93 -0.34 -9.51 15 11 H 0.09 2.09 6.27 -52.49 -0.33 1.76 15 12 C 0.06 1.33 5.50 -17.29 -0.10 1.23 15 13 N -0.68 -16.54 11.50 55.57 0.64 -15.90 15 14 Si 0.92 16.61 29.56 -169.99 -5.03 11.58 15 15 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 16 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 17 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 18 C -0.20 -5.16 5.91 -104.65 -0.62 -5.78 15 19 C -0.02 -0.39 9.19 -39.44 -0.36 -0.75 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.06 0.69 8.09 -51.93 -0.42 0.27 15 22 H 0.06 0.76 8.08 -51.93 -0.42 0.34 15 23 H 0.14 2.19 8.06 -52.48 -0.42 1.77 15 24 H 0.10 2.39 8.06 -52.49 -0.42 1.96 15 25 H 0.12 2.61 8.06 -52.49 -0.42 2.18 15 26 H 0.28 6.14 8.29 -40.82 -0.34 5.80 15 27 H 0.12 2.43 6.54 -52.49 -0.34 2.08 15 LS Contribution 240.92 15.07 3.63 3.63 Total: -1.00 -29.12 240.92 -6.85 -35.97 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -2.34 Total: 3.63 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.56 Total: -12.05 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.45 Total: -42.76 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.12 -6.85 -35.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727823.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.728 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds