Wall clock time and date at job start Thu Apr 9 2020 14:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09002 * 109.20477 * 60.91912 * 9 7 2 11 11 C 1.52529 * 109.21274 * 301.60184 * 9 7 2 12 12 C 1.53157 * 110.22217 * 167.16031 * 11 9 7 13 13 S 1.81970 * 108.55740 * 64.67485 * 12 11 9 14 14 C 1.81368 * 101.90606 * 308.60013 * 13 12 11 15 15 C 1.53327 * 113.63673 * 181.64551 * 14 13 12 16 16 O 1.44327 * 85.29158 * 92.06431 * 15 14 13 17 17 C 1.44323 * 93.46633 * 23.68874 * 16 15 14 18 18 C 1.52543 * 112.49484 * 49.99513 * 14 13 12 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.34801 * 287.38995 * 11 9 7 21 21 H 1.09002 * 109.34628 * 46.93371 * 11 9 7 22 22 H 1.08994 * 109.62516 * 304.95261 * 12 11 9 23 23 H 1.08997 * 109.77345 * 184.48258 * 12 11 9 24 24 H 1.09004 * 113.89729 * 206.15348 * 15 14 13 25 25 H 1.08996 * 113.89841 * 337.97225 * 15 14 13 26 26 H 1.09006 * 113.89802 * 222.23047 * 17 16 15 27 27 H 1.08996 * 114.02773 * 90.41802 * 17 16 15 28 28 H 1.08997 * 109.42672 * 180.99203 * 18 14 13 29 29 H 1.08997 * 109.42372 * 61.15713 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6347 -2.5613 -0.8914 11 6 0.3518 -2.5539 1.2361 12 6 -0.6506 -3.7048 1.1085 13 16 0.2687 -5.2752 1.1002 14 6 1.5101 -4.9753 -0.1876 15 6 2.4278 -6.1756 -0.4483 16 8 1.4658 -6.5401 -1.4605 17 6 0.9816 -5.1889 -1.6113 18 6 2.2495 -3.6558 0.0104 19 1 -0.4850 0.8400 0.0004 20 1 0.9647 -2.7057 2.1247 21 1 -0.1894 -1.6124 1.3301 22 1 -1.2088 -3.6025 0.1780 23 1 -1.3399 -3.6887 1.9526 24 1 3.4062 -5.9053 -0.8457 25 1 2.4822 -6.8786 0.3829 26 1 -0.1026 -5.1151 -1.6956 27 1 1.5093 -4.6104 -2.3696 28 1 2.9680 -3.5181 -0.7975 29 1 2.7768 -3.6754 0.9641 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:09 Heat of formation + Delta-G solvation = -22.414068 kcal Electronic energy + Delta-G solvation = -12879.778660 eV Core-core repulsion = 10701.976240 eV Total energy + Delta-G solvation = -2177.802420 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 214.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.08787 -35.87818 -32.15493 -30.59418 -27.90449 -26.36593 -24.63122 -22.73563 -20.31676 -19.37339 -16.64651 -16.44503 -15.36210 -15.25656 -14.88707 -14.51779 -13.28735 -13.12333 -12.82073 -12.60388 -11.97686 -11.68955 -11.64487 -11.23251 -10.95913 -10.59415 -10.27305 -10.20955 -9.70251 -9.65129 -9.25802 -9.06604 -8.90152 -8.38462 -7.14123 -6.09220 -4.18843 2.27486 3.06157 3.24992 3.30312 3.32626 3.94114 4.33259 4.53569 5.17883 5.41225 5.46900 5.57850 5.77915 5.79339 5.97245 6.06403 6.16411 6.30789 6.37189 6.38687 6.51280 6.81207 7.00969 7.23359 7.56993 7.80448 7.96797 8.30454 8.84490 9.46945 10.93997 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.046316 B = 0.009871 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.394888 B = 2835.825710 C = 3148.105495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.045 3.955 10 H 0.026 0.974 11 C -0.117 4.117 12 C -0.069 4.069 13 S -0.259 6.259 14 C -0.090 4.090 15 C 0.061 3.939 16 O -0.380 6.380 17 C 0.055 3.945 18 C -0.102 4.102 19 H 0.262 0.738 20 H 0.043 0.957 21 H 0.111 0.889 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -6.803 0.088 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.026 3.974 10 H 0.044 0.956 11 C -0.156 4.156 12 C -0.217 4.217 13 S -0.030 6.030 14 C -0.200 4.200 15 C -0.017 4.017 16 O -0.299 6.299 17 C -0.024 4.024 18 C -0.140 4.140 19 H 0.072 0.928 20 H 0.062 0.938 21 H 0.129 0.871 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.098 -7.842 0.623 7.943 hybrid contribution 0.620 2.203 -0.571 2.359 sum 1.718 -5.639 0.052 5.896 Atomic orbital electron populations 1.69809 1.05892 1.26739 1.50400 1.24965 0.94892 0.99172 0.94955 0.86641 0.79626 0.82994 0.78680 1.20246 1.21233 1.20231 1.21126 0.92918 0.90322 1.50746 0.92596 1.18588 0.92615 0.91820 0.94348 0.95563 1.21868 0.96762 0.97660 0.99320 1.23676 0.99922 0.93790 1.04279 1.86192 1.39586 1.26332 1.50914 1.25501 0.97689 1.00482 0.96367 1.23793 0.92922 0.94013 0.90970 1.89649 1.53264 1.26597 1.60359 1.24136 1.00851 0.82419 0.95006 1.21803 0.98775 0.91921 1.01548 0.92768 0.93828 0.87122 0.90568 0.89486 0.89311 0.89120 0.88995 0.89455 0.91961 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 11.18 55.43 0.62 -23.49 15 2 C 0.06 1.62 5.23 -17.82 -0.09 1.52 15 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.51 -13.35 8.54 -34.44 -0.29 -13.65 15 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 15 9 C 0.04 1.04 1.86 -92.12 -0.17 0.87 15 10 H 0.03 0.66 7.63 -51.93 -0.40 0.27 15 11 C -0.12 -2.63 4.87 -26.89 -0.13 -2.76 15 12 C -0.07 -1.33 6.48 37.24 0.24 -1.09 15 13 S -0.26 -4.79 21.58 -107.50 -2.32 -7.11 15 14 C -0.09 -1.61 1.00 -90.50 -0.09 -1.70 15 15 C 0.06 0.95 8.40 37.29 0.31 1.27 15 16 O -0.38 -6.65 12.44 -35.23 -0.44 -7.09 15 17 C 0.05 0.94 7.91 37.30 0.29 1.24 15 18 C -0.10 -2.01 4.20 -27.07 -0.11 -2.12 15 19 H 0.26 6.84 8.31 -40.82 -0.34 6.51 15 20 H 0.04 0.98 8.07 -51.93 -0.42 0.56 15 21 H 0.11 2.79 5.65 -51.93 -0.29 2.50 15 22 H 0.08 1.49 8.12 -51.93 -0.42 1.07 15 23 H 0.09 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.09 1.20 8.10 -51.93 -0.42 0.78 15 25 H 0.09 1.32 8.08 -51.93 -0.42 0.90 15 26 H 0.09 1.57 8.08 -51.93 -0.42 1.15 15 27 H 0.09 1.42 8.10 -51.93 -0.42 1.00 15 28 H 0.06 1.19 8.12 -51.93 -0.42 0.77 15 29 H 0.06 1.26 8.09 -51.93 -0.42 0.83 15 LS Contribution 246.77 15.07 3.72 3.72 Total: -1.00 -26.93 246.77 -7.50 -34.43 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.02 Total: 0.49 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.04 Total: -16.42 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.62 Total: -23.49 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.44 Total: -7.09 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.32 Total: -7.11 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.93 -7.50 -34.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.015 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds