Wall clock time and date at job start Thu Apr 9 2020 14:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09002 * 109.20477 * 60.91912 * 9 7 2 11 11 C 1.52529 * 109.21274 * 301.60184 * 9 7 2 12 12 C 1.53157 * 110.22217 * 167.16031 * 11 9 7 13 13 S 1.81970 * 108.55740 * 64.67485 * 12 11 9 14 14 C 1.81368 * 101.90606 * 308.60013 * 13 12 11 15 15 C 1.53327 * 113.63673 * 181.64551 * 14 13 12 16 16 O 1.44327 * 85.29158 * 92.06431 * 15 14 13 17 17 C 1.44323 * 93.46633 * 23.68874 * 16 15 14 18 18 C 1.52543 * 112.49484 * 49.99513 * 14 13 12 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.34801 * 287.38995 * 11 9 7 21 21 H 1.09002 * 109.34628 * 46.93371 * 11 9 7 22 22 H 1.08994 * 109.62516 * 304.95261 * 12 11 9 23 23 H 1.08997 * 109.77345 * 184.48258 * 12 11 9 24 24 H 1.09004 * 113.89729 * 206.15348 * 15 14 13 25 25 H 1.08996 * 113.89841 * 337.97225 * 15 14 13 26 26 H 1.09006 * 113.89802 * 222.23047 * 17 16 15 27 27 H 1.08996 * 114.02773 * 90.41802 * 17 16 15 28 28 H 1.08997 * 109.42672 * 180.99203 * 18 14 13 29 29 H 1.08997 * 109.42372 * 61.15713 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6347 -2.5613 -0.8914 11 6 0.3518 -2.5539 1.2361 12 6 -0.6506 -3.7048 1.1085 13 16 0.2687 -5.2752 1.1002 14 6 1.5101 -4.9753 -0.1876 15 6 2.4278 -6.1756 -0.4483 16 8 1.4658 -6.5401 -1.4605 17 6 0.9816 -5.1889 -1.6113 18 6 2.2495 -3.6558 0.0104 19 1 -0.4850 0.8400 0.0004 20 1 0.9647 -2.7057 2.1247 21 1 -0.1894 -1.6124 1.3301 22 1 -1.2088 -3.6025 0.1780 23 1 -1.3399 -3.6887 1.9526 24 1 3.4062 -5.9053 -0.8457 25 1 2.4822 -6.8786 0.3829 26 1 -0.1026 -5.1151 -1.6956 27 1 1.5093 -4.6104 -2.3696 28 1 2.9680 -3.5181 -0.7975 29 1 2.7768 -3.6754 0.9641 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:09 Heat of formation + Delta-G solvation = -37.700839 kcal Electronic energy + Delta-G solvation = -12880.441544 eV Core-core repulsion = 10701.976240 eV Total energy + Delta-G solvation = -2178.465304 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 214.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.44820 -37.63583 -34.06421 -32.16102 -29.62187 -27.65822 -26.38457 -24.45333 -21.84315 -21.03360 -18.51720 -17.86505 -16.86062 -16.67739 -16.51096 -16.25563 -14.95951 -14.78514 -14.34753 -14.10232 -13.58117 -13.49158 -13.20817 -12.87743 -12.72929 -12.30468 -12.03486 -11.82282 -11.46244 -11.22714 -10.91660 -10.73020 -10.55529 -10.28741 -8.64663 -8.07909 -6.25245 0.81449 1.42765 1.43709 1.50693 1.53884 2.42276 2.62007 3.15021 3.16854 4.03408 4.13845 4.16628 4.31496 4.33976 4.49771 4.61039 4.67874 4.72599 4.85680 4.97070 5.07212 5.12840 5.22132 5.42643 5.58953 5.90375 6.06891 6.34851 6.85168 7.43459 8.92317 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.046316 B = 0.009871 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.394888 B = 2835.825710 C = 3148.105495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.044 3.956 10 H 0.002 0.998 11 C -0.109 4.109 12 C -0.066 4.066 13 S -0.248 6.248 14 C -0.098 4.098 15 C 0.071 3.929 16 O -0.391 6.391 17 C 0.057 3.943 18 C -0.091 4.091 19 H 0.261 0.739 20 H 0.038 0.962 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -7.479 0.079 7.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.025 3.975 10 H 0.020 0.980 11 C -0.149 4.149 12 C -0.214 4.214 13 S -0.019 6.019 14 C -0.209 4.209 15 C -0.007 4.007 16 O -0.310 6.310 17 C -0.022 4.022 18 C -0.130 4.130 19 H 0.071 0.929 20 H 0.057 0.943 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.042 -8.529 0.616 8.792 hybrid contribution 0.338 2.400 -0.568 2.489 sum 2.380 -6.129 0.047 6.575 Atomic orbital electron populations 1.69941 1.07009 1.27245 1.51017 1.25665 0.95638 1.02162 0.94817 0.85727 0.78467 0.79400 0.78758 1.19751 1.21160 1.19822 1.21507 0.93122 0.91804 1.50607 0.92762 1.18539 0.93008 0.92427 0.93488 0.98007 1.21662 0.96925 0.97592 0.98679 1.23518 0.99547 0.93525 1.04762 1.86136 1.39670 1.24800 1.51323 1.25644 0.98169 1.00498 0.96568 1.23981 0.93194 0.92623 0.90904 1.89643 1.53936 1.26584 1.60868 1.24141 1.00862 0.82507 0.94727 1.21626 0.98038 0.91610 1.01724 0.92933 0.94341 0.90079 0.91156 0.87828 0.86755 0.87833 0.89357 0.88552 0.91237 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.11 11.18 21.45 0.24 -49.87 15 2 C 0.02 0.85 5.23 84.65 0.44 1.29 15 3 Si 0.95 41.90 29.54 68.60 2.03 43.92 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 15 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 7 C -0.53 -27.72 8.54 25.60 0.22 -27.50 15 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 15 9 C 0.04 2.05 1.86 -11.76 -0.02 2.02 15 10 H 0.00 0.09 7.63 -2.39 -0.02 0.08 15 11 C -0.11 -4.93 4.87 30.49 0.15 -4.78 15 12 C -0.07 -2.51 6.48 72.03 0.47 -2.04 15 13 S -0.25 -8.76 21.58 -56.49 -1.22 -9.98 15 14 C -0.10 -3.32 1.00 -10.72 -0.01 -3.33 15 15 C 0.07 1.98 8.40 72.07 0.61 2.58 15 16 O -0.39 -12.72 12.44 -148.98 -1.85 -14.57 15 17 C 0.06 1.85 7.91 72.07 0.57 2.42 15 18 C -0.09 -3.48 4.20 30.38 0.13 -3.35 15 19 H 0.26 13.79 8.31 -92.71 -0.77 13.02 15 20 H 0.04 1.72 8.07 -2.39 -0.02 1.71 15 21 H 0.08 4.18 5.65 -2.39 -0.01 4.16 15 22 H 0.07 2.75 8.12 -2.39 -0.02 2.73 15 23 H 0.10 3.57 8.14 -2.39 -0.02 3.55 15 24 H 0.11 2.65 8.10 -2.38 -0.02 2.63 15 25 H 0.10 2.65 8.08 -2.39 -0.02 2.63 15 26 H 0.09 2.93 8.08 -2.38 -0.02 2.91 15 27 H 0.10 2.96 8.10 -2.39 -0.02 2.95 15 28 H 0.07 2.53 8.12 -2.39 -0.02 2.51 15 29 H 0.06 2.34 8.09 -2.39 -0.02 2.32 15 Total: -1.00 -55.96 246.77 2.86 -53.10 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.12 Total: 10.09 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 2.55 Total: -32.70 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.24 Total: -49.87 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.85 Total: -14.57 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.22 Total: -9.98 kcal Total: -55.96 2.86 -53.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.396 kcal (2) G-P(sol) polarization free energy of solvation -55.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds