Wall clock time and date at job start Thu Apr 9 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48501 * 109.47104 * 270.00325 * 3 2 1 5 5 H 1.48500 * 109.47150 * 29.99799 * 3 2 1 6 6 H 1.48495 * 109.47409 * 150.00454 * 3 2 1 7 7 C 1.37875 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99778 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46813 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99883 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.78181 * 328.21357 * 11 10 9 13 13 C 1.55159 * 110.72310 * 204.97249 * 11 10 9 14 14 C 1.55129 * 101.48546 * 205.97148 * 13 11 10 15 15 N 1.47422 * 104.72635 * 37.29415 * 14 13 11 16 16 C 1.34773 * 125.65011 * 155.82003 * 15 14 13 17 17 N 1.34784 * 119.99935 * 359.68948 * 16 15 14 18 18 O 1.21588 * 120.00151 * 179.41875 * 16 15 14 19 19 C 1.47027 * 108.69995 * 335.55302 * 15 14 13 20 20 H 0.97006 * 119.99784 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47165 * 60.00130 * 9 7 2 22 22 H 1.09007 * 109.46681 * 299.99788 * 9 7 2 23 23 H 1.08997 * 111.00170 * 324.20931 * 13 11 10 24 24 H 1.08997 * 111.00083 * 88.02301 * 13 11 10 25 25 H 1.09006 * 110.49733 * 278.44986 * 14 13 11 26 26 H 1.09002 * 110.34024 * 156.06450 * 14 13 11 27 27 H 0.96999 * 120.00044 * 179.72863 * 17 16 15 28 28 H 0.97005 * 119.99846 * 359.72693 * 17 16 15 29 29 H 1.09000 * 109.87516 * 120.70581 * 19 15 14 30 30 H 1.09001 * 109.87636 * 241.71181 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8753 0.0000 12 1 0.6169 -4.8518 0.5372 13 6 2.5168 -5.9366 0.6127 14 6 2.0143 -7.2345 -0.0724 15 7 1.6658 -6.8231 -1.4445 16 6 1.6258 -7.6329 -2.5211 17 7 1.9267 -8.9404 -2.3925 18 8 1.3136 -7.1849 -3.6075 19 6 1.3627 -5.3844 -1.4427 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8898 23 1 3.5542 -5.7288 0.3504 24 1 2.3935 -5.9940 1.6941 25 1 1.1351 -7.6220 0.4423 26 1 2.8054 -7.9841 -0.0905 27 1 1.8942 -9.5240 -3.1666 28 1 2.1759 -9.2977 -1.5257 29 1 2.0400 -4.8622 -2.1185 30 1 0.3307 -5.2227 -1.7541 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:15 Heat of formation + Delta-G solvation = -78.188758 kcal Electronic energy + Delta-G solvation = -14229.439781 eV Core-core repulsion = 11638.758669 eV Total energy + Delta-G solvation = -2590.681112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05471 -37.85371 -35.68062 -33.60981 -32.69774 -30.52084 -28.43041 -26.95608 -23.62768 -22.32086 -20.88819 -19.88454 -18.25363 -17.03123 -16.46607 -16.28332 -15.25696 -14.84581 -14.50829 -14.21782 -13.75182 -13.23540 -12.95237 -12.54626 -12.21880 -11.84907 -11.59672 -11.16784 -10.84791 -10.77278 -10.37638 -10.20272 -10.01925 -9.72433 -9.16411 -8.93930 -8.50953 -8.23770 -6.13408 -4.15669 2.79159 3.25851 3.30130 3.35263 3.39994 4.18574 4.31777 4.64859 4.67706 4.93419 5.21634 5.23610 5.34943 5.52117 5.77289 5.99527 6.06367 6.17031 6.25907 6.37667 6.81376 6.93524 7.04643 7.36885 7.76116 7.92188 8.09881 8.48072 8.65157 8.96237 9.49327 10.97985 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.057629 B = 0.005897 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.747794 B = 4746.805559 C = 4961.623796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.192 3.808 10 O -0.377 6.377 11 C 0.080 3.920 12 H 0.071 0.929 13 C -0.128 4.128 14 C 0.101 3.899 15 N -0.631 5.631 16 C 0.721 3.279 17 N -0.869 5.869 18 O -0.593 6.593 19 C 0.102 3.898 20 H 0.265 0.735 21 H 0.009 0.991 22 H 0.008 0.992 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.413 0.587 28 H 0.395 0.605 29 H 0.079 0.921 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -16.219 1.850 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.118 3.882 10 O -0.296 6.296 11 C 0.020 3.980 12 H 0.089 0.911 13 C -0.166 4.166 14 C -0.022 4.022 15 N -0.371 5.371 16 C 0.421 3.579 17 N -0.437 5.437 18 O -0.471 6.471 19 C -0.021 4.021 20 H 0.074 0.926 21 H 0.027 0.973 22 H 0.026 0.974 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.244 0.756 28 H 0.223 0.777 29 H 0.097 0.903 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.071 -15.618 1.133 15.957 hybrid contribution 0.114 0.386 0.109 0.417 sum 3.186 -15.232 1.243 15.611 Atomic orbital electron populations 1.69958 1.06114 1.27263 1.50289 1.24941 0.94976 0.99457 0.95014 0.86327 0.79632 0.82189 0.78298 1.20410 1.21065 1.19614 1.21034 0.94089 0.89263 1.51187 0.91479 1.20336 0.88754 0.83427 0.95685 1.87947 1.35139 1.12245 1.94266 1.22827 0.96178 0.86312 0.92673 0.91124 1.22875 1.01044 0.92481 1.00196 1.22339 0.99512 0.97855 0.82515 1.47481 1.72440 1.10070 1.07136 1.15456 0.78247 0.81013 0.83180 1.42971 1.77277 1.08653 1.14830 1.90976 1.55721 1.75100 1.25284 1.22476 1.01535 0.78463 0.99667 0.92579 0.97332 0.97392 0.89549 0.89500 0.91310 0.90972 0.75572 0.77733 0.90300 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.05 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.13 5.56 36.01 0.20 5.33 16 10 O -0.38 -8.73 10.05 -35.23 -0.35 -9.08 16 11 C 0.08 1.41 3.39 -24.90 -0.08 1.33 16 12 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 13 C -0.13 -1.66 6.82 -24.46 -0.17 -1.83 16 14 C 0.10 1.07 6.59 -2.41 -0.02 1.05 16 15 N -0.63 -9.30 3.32 -176.09 -0.59 -9.89 16 16 C 0.72 11.09 8.76 -86.91 -0.76 10.33 16 17 N -0.87 -8.38 8.83 27.64 0.24 -8.13 16 18 O -0.59 -11.99 17.51 5.29 0.09 -11.89 16 19 C 0.10 1.81 6.64 -3.06 -0.02 1.79 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 22 H 0.01 0.23 8.11 -51.93 -0.42 -0.20 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.56 7.28 -51.93 -0.38 0.18 16 27 H 0.41 3.32 8.93 -40.82 -0.36 2.96 16 28 H 0.39 2.57 7.30 -40.82 -0.30 2.28 16 29 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 260.93 15.07 3.93 3.93 Total: -1.00 -34.46 260.93 -6.17 -40.63 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.95 Total: -0.54 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.27 Total: 4.18 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.40 Total: -43.93 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.26 Total: -20.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.46 -6.17 -40.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.559 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds