Wall clock time and date at job start Thu Apr 9 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48501 * 109.47104 * 270.00325 * 3 2 1 5 5 H 1.48500 * 109.47150 * 29.99799 * 3 2 1 6 6 H 1.48495 * 109.47409 * 150.00454 * 3 2 1 7 7 C 1.37875 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99778 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46813 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99883 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.78181 * 328.21357 * 11 10 9 13 13 C 1.55159 * 110.72310 * 204.97249 * 11 10 9 14 14 C 1.55129 * 101.48546 * 205.97148 * 13 11 10 15 15 N 1.47422 * 104.72635 * 37.29415 * 14 13 11 16 16 C 1.34773 * 125.65011 * 155.82003 * 15 14 13 17 17 N 1.34784 * 119.99935 * 359.68948 * 16 15 14 18 18 O 1.21588 * 120.00151 * 179.41875 * 16 15 14 19 19 C 1.47027 * 108.69995 * 335.55302 * 15 14 13 20 20 H 0.97006 * 119.99784 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47165 * 60.00130 * 9 7 2 22 22 H 1.09007 * 109.46681 * 299.99788 * 9 7 2 23 23 H 1.08997 * 111.00170 * 324.20931 * 13 11 10 24 24 H 1.08997 * 111.00083 * 88.02301 * 13 11 10 25 25 H 1.09006 * 110.49733 * 278.44986 * 14 13 11 26 26 H 1.09002 * 110.34024 * 156.06450 * 14 13 11 27 27 H 0.96999 * 120.00044 * 179.72863 * 17 16 15 28 28 H 0.97005 * 119.99846 * 359.72693 * 17 16 15 29 29 H 1.09000 * 109.87516 * 120.70581 * 19 15 14 30 30 H 1.09001 * 109.87636 * 241.71181 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8753 0.0000 12 1 0.6169 -4.8518 0.5372 13 6 2.5168 -5.9366 0.6127 14 6 2.0143 -7.2345 -0.0724 15 7 1.6658 -6.8231 -1.4445 16 6 1.6258 -7.6329 -2.5211 17 7 1.9267 -8.9404 -2.3925 18 8 1.3136 -7.1849 -3.6075 19 6 1.3627 -5.3844 -1.4427 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8898 23 1 3.5542 -5.7288 0.3504 24 1 2.3935 -5.9940 1.6941 25 1 1.1351 -7.6220 0.4423 26 1 2.8054 -7.9841 -0.0905 27 1 1.8942 -9.5240 -3.1666 28 1 2.1759 -9.2977 -1.5257 29 1 2.0400 -4.8622 -2.1185 30 1 0.3307 -5.2227 -1.7541 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259992532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:15 Heat of formation + Delta-G solvation = -105.988647 kcal Electronic energy + Delta-G solvation = -14230.645275 eV Core-core repulsion = 11638.758669 eV Total energy + Delta-G solvation = -2591.886606 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.27239 -39.32330 -37.25277 -34.96574 -34.59378 -31.76671 -29.88886 -28.88861 -25.06039 -24.19550 -22.17102 -21.07495 -19.35555 -18.63044 -18.16558 -17.69764 -16.81886 -16.32715 -16.00569 -15.85703 -15.11220 -14.93583 -14.35069 -13.97070 -13.74552 -13.28096 -13.13133 -12.84309 -12.64078 -12.47614 -12.15695 -11.58552 -11.52702 -11.29153 -10.91366 -10.77251 -10.28321 -9.68217 -8.32731 -6.45209 1.40563 1.43266 1.54957 1.64405 2.06043 2.34722 3.01544 3.10197 3.31345 3.58230 3.66023 4.05565 4.29272 4.38619 4.57860 4.63479 4.75778 4.88177 4.98663 5.09696 5.17604 5.21010 5.55148 5.91473 5.94799 5.96769 6.50602 6.79119 6.90462 7.26585 7.56596 8.79419 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.057629 B = 0.005897 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.747794 B = 4746.805559 C = 4961.623796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.208 3.792 10 O -0.391 6.391 11 C 0.067 3.933 12 H 0.077 0.923 13 C -0.118 4.118 14 C 0.104 3.896 15 N -0.633 5.633 16 C 0.714 3.286 17 N -0.837 5.837 18 O -0.651 6.651 19 C 0.108 3.892 20 H 0.271 0.729 21 H -0.016 1.016 22 H -0.005 1.005 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.423 0.577 28 H 0.415 0.585 29 H 0.045 0.955 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -17.463 3.099 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.588 4.588 8 H 0.081 0.919 9 C 0.133 3.867 10 O -0.310 6.310 11 C 0.008 3.992 12 H 0.095 0.905 13 C -0.155 4.155 14 C -0.017 4.017 15 N -0.372 5.372 16 C 0.414 3.586 17 N -0.408 5.408 18 O -0.533 6.533 19 C -0.017 4.017 20 H 0.080 0.920 21 H 0.001 0.999 22 H 0.013 0.987 23 H 0.098 0.902 24 H 0.133 0.867 25 H 0.115 0.885 26 H 0.132 0.868 27 H 0.257 0.743 28 H 0.247 0.753 29 H 0.064 0.936 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.180 -16.949 2.430 17.625 hybrid contribution -0.243 0.662 -0.275 0.757 sum 3.936 -16.287 2.155 16.894 Atomic orbital electron populations 1.70065 1.07753 1.28679 1.50387 1.25942 0.95937 1.03364 0.93869 0.85194 0.78501 0.77095 0.78698 1.19672 1.19828 1.18622 1.21399 0.94181 0.90858 1.52396 0.91904 1.19918 0.88581 0.84482 0.93751 1.87890 1.35032 1.13701 1.94390 1.23193 0.98013 0.84922 0.93110 0.90532 1.22916 0.99344 0.91452 1.01837 1.22654 1.02019 0.97337 0.79692 1.47438 1.72301 1.08545 1.08926 1.15726 0.78126 0.82440 0.82344 1.42646 1.75292 1.06357 1.16464 1.90938 1.58257 1.76522 1.27599 1.22140 0.99680 0.80753 0.99100 0.92026 0.99850 0.98680 0.90229 0.86725 0.88513 0.86815 0.74313 0.75329 0.93639 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.98 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -32.76 9.43 25.60 0.24 -32.52 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.55 5.56 71.24 0.40 11.95 16 10 O -0.39 -18.63 10.05 -148.98 -1.50 -20.12 16 11 C 0.07 2.36 3.39 31.78 0.11 2.47 16 12 H 0.08 2.61 7.89 -2.39 -0.02 2.59 16 13 C -0.12 -2.77 6.82 32.06 0.22 -2.55 16 14 C 0.10 1.81 6.59 86.93 0.57 2.38 16 15 N -0.63 -17.86 3.32 -829.29 -2.76 -20.62 16 16 C 0.71 21.17 8.76 179.05 1.57 22.74 16 17 N -0.84 -13.70 8.83 -184.74 -1.63 -15.33 16 18 O -0.65 -26.80 17.51 -3.99 -0.07 -26.87 16 19 C 0.11 3.99 6.64 86.73 0.58 4.56 16 20 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 21 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 22 H 0.00 -0.26 8.11 -2.38 -0.02 -0.28 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.11 1.11 7.28 -2.39 -0.02 1.10 16 27 H 0.42 5.69 8.93 -92.71 -0.83 4.86 16 28 H 0.41 3.56 7.30 -92.70 -0.68 2.88 16 29 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -78.00 260.93 0.15 -77.85 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -0.35 Total: 4.38 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.14 Total: 9.94 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -4.10 Total: -91.67 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.57 Total: -47.00 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -78.00 0.15 -77.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.137 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds