Wall clock time and date at job start Thu Apr 9 2020 14:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45207 * 109.47331 * 2 1 4 4 C 1.34228 * 116.99950 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00183 * 0.28215 * 4 3 2 6 6 C 1.50699 * 119.99531 * 180.02562 * 4 3 2 7 7 H 1.08998 * 110.45815 * 327.93834 * 6 4 3 8 8 C 1.54481 * 110.50747 * 205.34309 * 6 4 3 9 9 O 1.44432 * 104.80092 * 217.37804 * 8 6 4 10 10 C 1.44425 * 105.27603 * 40.51070 * 9 8 6 11 11 C 1.54510 * 110.51325 * 90.55263 * 6 4 3 12 12 H 1.08992 * 110.50978 * 237.28688 * 11 6 4 13 13 C 1.50696 * 110.50877 * 359.97438 * 11 6 4 14 14 H 1.08004 * 120.00160 * 5.29716 * 13 11 6 15 15 C 1.37876 * 119.99936 * 185.29657 * 13 11 6 16 16 N 1.31512 * 120.00044 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00213 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47136 * 119.99759 * 17 15 13 20 20 H 1.48503 * 109.47317 * 239.99892 * 17 15 13 21 21 H 1.08997 * 109.46873 * 299.99481 * 1 2 3 22 22 H 1.09002 * 109.47757 * 59.99398 * 1 2 3 23 23 H 1.08998 * 109.47425 * 179.97438 * 1 2 3 24 24 H 1.09011 * 109.47111 * 240.00655 * 2 1 3 25 25 H 1.09002 * 109.47757 * 120.00602 * 2 1 3 26 26 H 1.09003 * 110.37407 * 336.20234 * 8 6 4 27 27 H 1.09002 * 110.37569 * 98.43840 * 8 6 4 28 28 H 1.08997 * 110.37388 * 78.31979 * 10 9 8 29 29 H 1.08994 * 110.36795 * 200.54830 * 10 9 8 30 30 H 0.97005 * 120.00278 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0061 6 6 3.9207 2.9374 0.0000 7 1 3.2662 3.6206 -0.5414 8 6 5.3356 2.9381 -0.6200 9 8 6.0819 3.8938 0.1648 10 6 5.6684 3.6702 1.5304 11 6 4.1412 3.4316 1.4473 12 1 3.5977 4.3602 1.6207 13 6 3.7154 2.3769 2.4359 14 1 3.4022 1.4042 2.0865 15 6 3.7256 2.6539 3.7865 16 7 4.1074 3.8382 4.2120 17 14 3.1971 1.3469 5.0120 18 1 2.8169 0.1100 4.2834 19 1 4.3216 1.0508 5.9357 20 1 2.0333 1.8406 5.7912 21 1 -0.3633 0.5137 0.8900 22 1 -0.3635 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.7853 1.9483 -0.5405 27 1 5.2928 3.2521 -1.6629 28 1 6.1690 2.7927 1.9397 29 1 5.8832 4.5477 2.1403 30 1 4.1150 4.0330 5.1623 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:18 Heat of formation + Delta-G solvation = -142.530138 kcal Electronic energy + Delta-G solvation = -15053.030290 eV Core-core repulsion = 12427.266375 eV Total energy + Delta-G solvation = -2625.763915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.08589 -38.02232 -35.79696 -33.30288 -31.62944 -30.79006 -28.32918 -24.74771 -23.95999 -22.15269 -21.03626 -19.35171 -17.56232 -16.45733 -16.06222 -15.35244 -15.21028 -14.42036 -14.12834 -13.91272 -13.53634 -12.67519 -12.64152 -12.31686 -11.89008 -11.52629 -11.22884 -11.12278 -11.02570 -10.69651 -10.60335 -10.10054 -10.01024 -9.75039 -9.61323 -9.07511 -8.82590 -8.53839 -6.20469 -4.24540 3.06244 3.21950 3.30218 3.33833 3.36559 4.31753 4.89026 5.13256 5.20957 5.25862 5.41496 5.57063 5.60039 5.66998 5.93477 6.03117 6.06193 6.20085 6.38663 6.42019 6.66512 6.78925 7.10115 7.15404 7.44105 7.62298 7.78924 8.15096 8.56012 8.75624 9.41542 10.89810 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.016478 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.595851 B = 1698.848049 C = 2829.350171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.507 3.493 5 O -0.526 6.526 6 C -0.121 4.121 7 H 0.094 0.906 8 C 0.062 3.938 9 O -0.394 6.394 10 C 0.058 3.942 11 C 0.040 3.960 12 H 0.059 0.941 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -3.642 -7.070 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.352 3.648 5 O -0.415 6.415 6 C -0.140 4.140 7 H 0.112 0.888 8 C -0.016 4.016 9 O -0.313 6.313 10 C -0.018 4.018 11 C 0.021 3.979 12 H 0.077 0.923 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.954 -3.687 -6.974 8.824 hybrid contribution -0.459 -1.002 0.980 1.474 sum -4.413 -4.688 -5.994 8.797 Atomic orbital electron populations 1.21769 0.93290 1.02253 1.03401 1.22855 0.94901 0.81571 1.01968 1.86533 1.25371 1.30947 1.84327 1.23062 0.79914 0.92308 0.69528 1.90562 1.60375 1.43192 1.47389 1.22645 0.97214 0.90744 1.03423 0.88799 1.23225 0.88951 0.94573 0.94805 1.88981 1.65027 1.57077 1.20249 1.23857 0.96419 1.00959 0.80548 1.20082 0.93261 0.98018 0.86573 0.92279 1.21139 1.45703 0.98215 0.91109 0.91991 1.24928 0.94526 0.95485 0.98423 1.69934 1.46692 1.20479 1.15162 0.86500 0.78463 0.81843 0.81139 1.19718 1.20701 1.20687 0.91329 0.91847 0.90895 0.92049 0.91511 0.91183 0.90134 0.92905 0.89497 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.29 37.15 0.38 -1.50 16 2 C 0.06 1.01 6.19 37.15 0.23 1.24 16 3 O -0.35 -7.12 10.17 -39.25 -0.40 -7.52 16 4 C 0.51 11.06 4.47 36.01 0.16 11.22 16 5 O -0.53 -12.37 15.07 -18.75 -0.28 -12.65 16 6 C -0.12 -2.55 3.61 -90.20 -0.33 -2.88 16 7 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 8 C 0.06 1.23 7.13 37.93 0.27 1.50 16 9 O -0.39 -8.74 11.65 -35.23 -0.41 -9.15 16 10 C 0.06 1.40 6.77 38.10 0.26 1.66 16 11 C 0.04 0.98 2.90 -90.03 -0.26 0.72 16 12 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 13 C -0.52 -14.21 7.81 -34.44 -0.27 -14.48 16 14 H 0.06 1.73 5.33 -52.48 -0.28 1.45 16 15 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 16 N -0.89 -24.69 12.97 55.43 0.72 -23.97 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.92 8.13 -51.92 -0.42 0.50 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.45 6.85 -51.93 -0.36 1.10 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.34 7.87 -51.93 -0.41 0.93 16 29 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 256.88 15.07 3.87 3.87 Total: -1.00 -29.75 256.88 -5.16 -34.90 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.98 Total: -1.02 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.35 Total: -0.72 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.72 Total: -23.97 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.09 Total: -29.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.75 -5.16 -34.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.628 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds