Wall clock time and date at job start Thu Apr 9 2020 14:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45207 * 109.47331 * 2 1 4 4 C 1.34228 * 116.99950 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00183 * 0.28215 * 4 3 2 6 6 C 1.50699 * 119.99531 * 180.02562 * 4 3 2 7 7 H 1.08998 * 110.45815 * 327.93834 * 6 4 3 8 8 C 1.54481 * 110.50747 * 205.34309 * 6 4 3 9 9 O 1.44432 * 104.80092 * 217.37804 * 8 6 4 10 10 C 1.44425 * 105.27603 * 40.51070 * 9 8 6 11 11 C 1.54510 * 110.51325 * 90.55263 * 6 4 3 12 12 H 1.08992 * 110.50978 * 237.28688 * 11 6 4 13 13 C 1.50696 * 110.50877 * 359.97438 * 11 6 4 14 14 H 1.08004 * 120.00160 * 5.29716 * 13 11 6 15 15 C 1.37876 * 119.99936 * 185.29657 * 13 11 6 16 16 N 1.31512 * 120.00044 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00213 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47136 * 119.99759 * 17 15 13 20 20 H 1.48503 * 109.47317 * 239.99892 * 17 15 13 21 21 H 1.08997 * 109.46873 * 299.99481 * 1 2 3 22 22 H 1.09002 * 109.47757 * 59.99398 * 1 2 3 23 23 H 1.08998 * 109.47425 * 179.97438 * 1 2 3 24 24 H 1.09011 * 109.47111 * 240.00655 * 2 1 3 25 25 H 1.09002 * 109.47757 * 120.00602 * 2 1 3 26 26 H 1.09003 * 110.37407 * 336.20234 * 8 6 4 27 27 H 1.09002 * 110.37569 * 98.43840 * 8 6 4 28 28 H 1.08997 * 110.37388 * 78.31979 * 10 9 8 29 29 H 1.08994 * 110.36795 * 200.54830 * 10 9 8 30 30 H 0.97005 * 120.00278 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0061 6 6 3.9207 2.9374 0.0000 7 1 3.2662 3.6206 -0.5414 8 6 5.3356 2.9381 -0.6200 9 8 6.0819 3.8938 0.1648 10 6 5.6684 3.6702 1.5304 11 6 4.1412 3.4316 1.4473 12 1 3.5977 4.3602 1.6207 13 6 3.7154 2.3769 2.4359 14 1 3.4022 1.4042 2.0865 15 6 3.7256 2.6539 3.7865 16 7 4.1074 3.8382 4.2120 17 14 3.1971 1.3469 5.0120 18 1 2.8169 0.1100 4.2834 19 1 4.3216 1.0508 5.9357 20 1 2.0333 1.8406 5.7912 21 1 -0.3633 0.5137 0.8900 22 1 -0.3635 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.7853 1.9483 -0.5405 27 1 5.2928 3.2521 -1.6629 28 1 6.1690 2.7927 1.9397 29 1 5.8832 4.5477 2.1403 30 1 4.1150 4.0330 5.1623 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:18 Heat of formation + Delta-G solvation = -161.357139 kcal Electronic energy + Delta-G solvation = -15053.846690 eV Core-core repulsion = 12427.266375 eV Total energy + Delta-G solvation = -2626.580315 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.77165 -39.74892 -37.43818 -35.30388 -33.23644 -32.26106 -30.17126 -26.79411 -25.46295 -23.58321 -22.84365 -21.08467 -19.36808 -18.21031 -17.75805 -17.07796 -16.90823 -16.33482 -15.91183 -15.60476 -15.01192 -14.46372 -14.10841 -13.75508 -13.59162 -13.03428 -12.89872 -12.77483 -12.61926 -12.46930 -12.44517 -11.91675 -11.56521 -11.49055 -11.42879 -10.99681 -10.74579 -10.54207 -8.28498 -6.37955 1.32607 1.34254 1.36866 1.45740 1.84688 2.33624 3.03970 3.16674 3.85541 3.96757 4.01048 4.04240 4.14458 4.33620 4.36580 4.57761 4.75287 4.79255 4.88835 4.93970 4.95840 5.16050 5.20487 5.40421 5.52940 5.69153 5.79271 6.15188 6.66776 6.90696 7.30536 8.81870 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.016478 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.595851 B = 1698.848049 C = 2829.350171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.361 6.361 4 C 0.505 3.495 5 O -0.549 6.549 6 C -0.121 4.121 7 H 0.123 0.877 8 C 0.063 3.937 9 O -0.395 6.395 10 C 0.070 3.930 11 C 0.033 3.967 12 H 0.042 0.958 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.026 3.974 16 N -0.909 5.909 17 Si 0.947 3.053 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.270 1.270 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.126 0.874 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -4.194 -7.902 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.352 3.648 5 O -0.440 6.440 6 C -0.140 4.140 7 H 0.141 0.859 8 C -0.014 4.014 9 O -0.314 6.314 10 C -0.006 4.006 11 C 0.014 3.986 12 H 0.060 0.940 13 C -0.574 4.574 14 H 0.069 0.931 15 C -0.175 4.175 16 N -0.547 5.547 17 Si 0.773 3.227 18 H -0.201 1.201 19 H -0.202 1.202 20 H -0.196 1.196 21 H 0.077 0.923 22 H 0.096 0.904 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.923 -4.234 -7.814 10.160 hybrid contribution -0.191 -0.861 1.192 1.483 sum -5.114 -5.096 -6.622 9.796 Atomic orbital electron populations 1.21802 0.90085 1.04383 1.03632 1.23238 0.97438 0.79799 1.01808 1.86518 1.24294 1.33229 1.83769 1.23156 0.80448 0.92219 0.69007 1.90543 1.61026 1.43952 1.48469 1.22662 0.98725 0.91158 1.01470 0.85943 1.23411 0.87571 0.93834 0.96575 1.88971 1.65471 1.57681 1.19277 1.23525 0.95966 0.99536 0.81602 1.19990 0.93200 0.96807 0.88575 0.94030 1.21330 1.45768 0.98323 0.91999 0.93060 1.25606 0.94664 0.97231 0.99977 1.70009 1.47339 1.21722 1.15639 0.85664 0.78460 0.79458 0.79162 1.20052 1.20249 1.19565 0.92268 0.90400 0.87807 0.90549 0.93398 0.92292 0.85591 0.94852 0.90452 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 10.29 71.98 0.74 -2.47 16 2 C 0.05 1.60 6.19 71.98 0.45 2.04 16 3 O -0.36 -14.10 10.17 -51.40 -0.52 -14.63 16 4 C 0.51 21.64 4.47 71.24 0.32 21.96 16 5 O -0.55 -25.58 15.07 21.97 0.33 -25.25 16 6 C -0.12 -4.95 3.61 -10.52 -0.04 -4.99 16 7 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 8 C 0.06 2.37 7.13 72.49 0.52 2.89 16 9 O -0.39 -17.08 11.65 -148.98 -1.74 -18.81 16 10 C 0.07 3.42 6.77 72.60 0.49 3.91 16 11 C 0.03 1.65 2.90 -10.41 -0.03 1.62 16 12 H 0.04 2.18 8.14 -2.39 -0.02 2.17 16 13 C -0.54 -29.29 7.81 25.60 0.20 -29.09 16 14 H 0.05 2.88 5.33 -2.91 -0.02 2.86 16 15 C 0.03 1.43 5.39 84.65 0.46 1.89 16 16 N -0.91 -50.99 12.97 21.45 0.28 -50.71 16 17 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.08 2.16 8.13 -2.38 -0.02 2.14 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 2.38 6.85 -2.39 -0.02 2.36 16 27 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.03 1.72 7.87 -2.39 -0.02 1.71 16 29 H 0.08 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -63.00 256.88 4.60 -58.40 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.12 Total: 7.65 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 3.10 Total: -2.26 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.28 Total: -50.71 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -1.93 Total: -58.69 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.00 4.60 -58.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.962 kcal (2) G-P(sol) polarization free energy of solvation -62.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds