Wall clock time and date at job start Thu Apr 9 2020 14:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45201 * 109.46926 * 2 1 4 4 C 1.34231 * 116.99958 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00153 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99682 * 179.97438 * 4 3 2 7 7 H 1.08995 * 110.46239 * 302.60703 * 6 4 3 8 8 C 1.54474 * 110.50895 * 65.36361 * 6 4 3 9 9 O 1.44423 * 104.80596 * 142.62028 * 8 6 4 10 10 C 1.44785 * 105.29321 * 319.45199 * 9 8 6 11 11 C 1.54480 * 104.62751 * 40.53320 * 10 9 8 12 12 H 1.08998 * 110.51159 * 217.27322 * 11 10 9 13 13 C 1.50706 * 110.50928 * 94.70496 * 11 10 9 14 14 H 1.08005 * 119.99758 * 243.30528 * 13 11 10 15 15 C 1.37871 * 120.00102 * 63.30413 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.08995 * 109.47327 * 60.00477 * 1 2 3 22 22 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47693 * 300.00010 * 1 2 3 24 24 H 1.08999 * 109.47594 * 239.99527 * 2 1 3 25 25 H 1.09003 * 109.46987 * 119.99545 * 2 1 3 26 26 H 1.09005 * 110.37147 * 261.45350 * 8 6 4 27 27 H 1.09004 * 110.37610 * 23.78546 * 8 6 4 28 28 H 1.08996 * 110.42769 * 281.77827 * 10 9 8 29 29 H 1.09004 * 110.48773 * 159.32186 * 10 9 8 30 30 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9376 0.0000 7 1 3.5581 3.4995 -0.8607 8 6 3.5694 3.6690 1.3145 9 8 4.7444 4.4477 1.6288 10 6 5.8669 3.5885 1.3158 11 6 5.4647 2.8847 0.0007 12 1 5.8116 1.8514 -0.0010 13 6 6.0191 3.6284 -1.1871 14 1 5.3480 4.0754 -1.9056 15 6 7.3830 3.7381 -1.3565 16 7 8.2002 3.1934 -0.4818 17 14 8.0700 4.6592 -2.8292 18 1 8.2556 3.7157 -3.9608 19 1 7.1229 5.7310 -3.2285 20 1 9.3779 5.2634 -2.4689 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.7094 4.3223 1.1672 27 1 3.3682 2.9487 2.1075 28 1 6.0172 2.8551 2.1080 29 1 6.7707 4.1799 1.1686 30 1 7.8434 2.7147 0.2827 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:21 Heat of formation + Delta-G solvation = -144.279623 kcal Electronic energy + Delta-G solvation = -14750.926466 eV Core-core repulsion = 12125.086688 eV Total energy + Delta-G solvation = -2625.839778 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.31969 -38.28742 -36.21300 -33.47510 -31.94372 -30.88941 -28.11341 -24.74022 -23.95579 -22.49601 -21.22292 -19.53388 -17.66334 -16.85205 -16.36441 -16.24824 -15.00752 -14.41693 -14.24419 -13.80721 -13.70712 -13.22374 -12.89661 -12.19511 -11.90329 -11.84010 -11.51867 -11.46809 -10.84925 -10.70327 -10.38458 -10.28827 -10.14154 -10.01882 -9.80109 -9.18436 -8.56511 -8.34853 -6.42421 -4.14715 2.63695 2.96325 3.42712 3.46119 3.61686 4.49208 4.71490 4.91404 4.95316 5.08093 5.25964 5.31014 5.38174 5.55630 5.64956 5.73232 5.84451 5.93676 6.17067 6.21133 6.37183 6.57363 6.74132 7.02404 7.24456 7.62084 8.04543 8.19163 8.32433 8.76279 9.54657 10.95531 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.008591 C = 0.007824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.704696 B = 3258.406551 C = 3577.991674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.470 3.530 5 O -0.501 6.501 6 C -0.107 4.107 7 H 0.115 0.885 8 C 0.065 3.935 9 O -0.374 6.374 10 C 0.042 3.958 11 C 0.013 3.987 12 H 0.059 0.941 13 C -0.589 4.589 14 H 0.054 0.946 15 C 0.019 3.981 16 N -0.909 5.909 17 Si 1.074 2.926 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.283 1.283 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.102 0.898 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 -3.030 1.593 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.281 6.281 4 C 0.313 3.687 5 O -0.387 6.387 6 C -0.127 4.127 7 H 0.133 0.867 8 C -0.013 4.013 9 O -0.293 6.293 10 C -0.034 4.034 11 C -0.006 4.006 12 H 0.076 0.924 13 C -0.627 4.627 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.545 5.545 17 Si 0.902 3.098 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.208 1.208 21 H 0.085 0.915 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.120 0.880 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.813 -2.672 0.947 11.179 hybrid contribution -1.479 -0.993 0.625 1.888 sum -12.292 -3.665 1.572 12.923 Atomic orbital electron populations 1.21784 0.92932 1.02606 1.03404 1.22950 0.95097 0.81162 1.02404 1.86542 1.25386 1.31597 1.84551 1.23963 0.79773 0.93269 0.71677 1.90620 1.60161 1.43117 1.44783 1.22698 1.00061 0.88529 1.01371 0.86731 1.23095 0.90561 0.94430 0.93227 1.89112 1.14960 1.38515 1.86715 1.23995 0.90172 0.93410 0.95841 1.20323 0.86314 0.98956 0.94969 0.92359 1.21909 0.94382 1.37898 1.08495 0.92752 1.25860 0.93485 0.96898 1.02236 1.70796 1.37932 1.32887 1.12845 0.83468 0.75838 0.75927 0.74592 1.21431 1.21344 1.20849 0.91531 0.90565 0.91596 0.91439 0.91566 0.89075 0.93424 0.95093 0.87969 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -6.07 10.22 -39.26 -0.40 -6.47 16 4 C 0.47 9.49 7.14 36.01 0.26 9.75 16 5 O -0.50 -11.51 15.03 -18.75 -0.28 -11.79 16 6 C -0.11 -2.27 3.26 -90.21 -0.29 -2.56 16 7 H 0.11 2.37 7.46 -51.93 -0.39 1.98 16 8 C 0.06 1.23 7.17 37.93 0.27 1.50 16 9 O -0.37 -8.48 11.66 -35.23 -0.41 -8.89 16 10 C 0.04 1.03 6.12 37.93 0.23 1.26 16 11 C 0.01 0.33 2.24 -90.20 -0.20 0.13 16 12 H 0.06 1.63 6.36 -51.93 -0.33 1.30 16 13 C -0.59 -16.42 8.54 -34.44 -0.29 -16.71 16 14 H 0.05 1.49 7.38 -52.48 -0.39 1.10 16 15 C 0.02 0.55 5.10 -17.82 -0.09 0.45 16 16 N -0.91 -27.03 12.98 55.43 0.72 -26.31 16 17 Si 1.07 25.07 29.90 -169.99 -5.08 19.98 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 25 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.71 6.46 -51.93 -0.34 2.37 16 30 H 0.27 7.99 6.07 -40.82 -0.25 7.74 16 LS Contribution 255.73 15.07 3.85 3.85 Total: -1.00 -31.49 255.73 -4.96 -36.45 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.85 Total: -0.60 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 0.49 Total: -6.23 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.72 Total: -26.31 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.09 Total: -27.15 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.49 -4.96 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.825 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds