Wall clock time and date at job start Thu Apr 9 2020 14:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48500 * 109.46823 * 270.00195 * 3 2 1 5 5 H 1.48494 * 109.46965 * 30.00007 * 3 2 1 6 6 H 1.48508 * 109.47058 * 150.00346 * 3 2 1 7 7 C 1.38638 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00095 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.42905 * 117.00184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.88834 * 308.87651 * 11 10 9 13 13 C 1.55157 * 111.00186 * 185.00155 * 11 10 9 14 14 C 1.54329 * 102.93961 * 206.41981 * 13 11 10 15 15 N 1.47020 * 107.27028 * 22.19446 * 14 13 11 16 16 C 1.34776 * 125.65045 * 181.01143 * 15 14 13 17 17 N 1.34778 * 119.99876 * 0.02562 * 16 15 14 18 18 O 1.21589 * 120.00419 * 180.02562 * 16 15 14 19 19 C 1.47420 * 108.70394 * 1.05708 * 15 14 13 20 20 H 0.97001 * 120.00204 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47103 * 300.00564 * 10 9 7 22 22 H 1.09004 * 109.47054 * 60.00068 * 10 9 7 23 23 H 1.08996 * 110.72196 * 324.78608 * 13 11 10 24 24 H 1.09005 * 110.71917 * 88.06307 * 13 11 10 25 25 H 1.08997 * 109.88151 * 141.60929 * 14 13 11 26 26 H 1.08993 * 109.88381 * 262.62088 * 14 13 11 27 27 H 0.97008 * 119.99722 * 359.97438 * 17 16 15 28 28 H 0.96998 * 120.00133 * 179.97438 * 17 16 15 29 29 H 1.09000 * 110.37115 * 217.03467 * 19 15 14 30 30 H 1.09005 * 110.36849 * 94.71343 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1127 -3.5676 -0.0005 11 6 1.1807 -4.7810 -0.0012 12 1 0.4367 -4.7000 0.7914 13 6 1.9862 -6.1010 0.1251 14 6 1.0648 -7.1347 -0.5562 15 7 0.1674 -6.3941 -1.4549 16 6 -0.8018 -6.9360 -2.2188 17 7 -1.0119 -8.2671 -2.1968 18 8 -1.4866 -6.2241 -2.9278 19 6 0.5039 -4.9606 -1.3829 20 1 -0.4850 0.8400 -0.0004 21 1 2.7416 -3.5925 -0.8905 22 1 2.7415 -3.5925 0.8895 23 1 2.9368 -6.0247 -0.4027 24 1 2.1450 -6.3572 1.1726 25 1 1.6625 -7.8427 -1.1301 26 1 0.4831 -7.6660 0.1970 27 1 -0.4653 -8.8351 -1.6314 28 1 -1.7096 -8.6571 -2.7463 29 1 -0.4004 -4.3551 -1.4439 30 1 1.1954 -4.6927 -2.1818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260018492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:22 Heat of formation + Delta-G solvation = -66.574159 kcal Electronic energy + Delta-G solvation = -14290.533775 eV Core-core repulsion = 11700.356310 eV Total energy + Delta-G solvation = -2590.177465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98244 -37.63401 -35.88637 -33.64384 -32.02345 -31.06262 -29.07160 -25.54722 -24.11863 -22.68119 -20.17913 -19.79229 -18.10698 -17.42977 -16.84308 -15.97213 -15.13865 -14.70969 -14.65139 -13.92884 -13.82429 -13.15438 -12.70483 -12.65158 -12.31556 -11.70093 -11.51612 -11.00988 -10.80348 -10.68187 -10.40658 -10.13666 -10.06869 -9.64569 -9.48737 -9.13452 -8.42108 -7.94694 -5.91879 -3.56441 2.91330 3.33576 3.34560 3.35839 3.39993 4.25453 4.33566 4.69279 4.83214 4.99367 5.31081 5.42061 5.46694 5.68950 5.87842 5.93155 6.05129 6.23626 6.34820 6.38993 6.55876 6.65009 6.79435 6.89022 7.05163 7.49518 8.02047 8.45387 8.74072 9.51088 10.18353 11.28978 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.051406 B = 0.006408 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.547708 B = 4368.715623 C = 4779.551248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.363 4.363 8 H 0.062 0.938 9 O -0.294 6.294 10 C 0.085 3.915 11 C -0.093 4.093 12 H 0.090 0.910 13 C -0.124 4.124 14 C 0.102 3.898 15 N -0.636 5.636 16 C 0.720 3.280 17 N -0.870 5.870 18 O -0.591 6.591 19 C 0.135 3.865 20 H 0.258 0.742 21 H 0.026 0.974 22 H 0.028 0.972 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.394 0.606 28 H 0.412 0.588 29 H 0.087 0.913 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -16.489 0.140 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.442 4.442 8 H 0.080 0.920 9 O -0.210 6.210 10 C 0.006 3.994 11 C -0.112 4.112 12 H 0.108 0.892 13 C -0.162 4.162 14 C -0.021 4.021 15 N -0.375 5.375 16 C 0.420 3.580 17 N -0.438 5.438 18 O -0.468 6.468 19 C 0.012 3.988 20 H 0.068 0.932 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.221 0.779 28 H 0.243 0.757 29 H 0.106 0.894 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.966 -15.789 -0.327 16.069 hybrid contribution 0.747 0.252 0.099 0.794 sum 3.712 -15.537 -0.229 15.976 Atomic orbital electron populations 1.70021 1.05404 1.25947 1.51574 1.24957 0.95640 0.97744 0.99130 0.85977 0.78630 0.82130 0.78070 1.20699 1.20912 1.20082 1.20773 0.90140 0.82668 1.50623 0.92009 1.85644 1.31624 1.10353 1.93338 1.21982 0.92477 0.86692 0.98228 1.22302 0.98117 0.93412 0.97384 0.89211 1.22615 0.98302 0.94228 1.01091 1.21963 0.92161 0.95274 0.92721 1.47703 1.34988 1.09668 1.45148 1.15489 0.80086 0.82233 0.80215 1.42985 1.42395 1.06510 1.51912 1.90989 1.50298 1.60457 1.45083 1.22186 1.01086 0.78642 0.96858 0.93179 0.95637 0.95399 0.90388 0.89918 0.91967 0.91865 0.77860 0.75672 0.89411 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.24 13.67 55.48 0.76 -27.48 16 2 C 0.02 0.71 5.49 -17.51 -0.10 0.61 16 3 Si 0.92 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.36 -10.70 9.89 30.88 0.31 -10.39 16 8 H 0.06 1.70 7.77 -52.49 -0.41 1.29 16 9 O -0.29 -8.38 9.74 -16.49 -0.16 -8.54 16 10 C 0.08 1.78 5.47 37.16 0.20 1.98 16 11 C -0.09 -1.60 3.30 -88.47 -0.29 -1.89 16 12 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 13 C -0.12 -1.48 6.42 -24.89 -0.16 -1.64 16 14 C 0.10 1.10 6.15 -3.06 -0.02 1.08 16 15 N -0.64 -9.72 3.33 -176.24 -0.59 -10.31 16 16 C 0.72 11.65 8.76 -86.92 -0.76 10.88 16 17 N -0.87 -8.99 8.83 27.63 0.24 -8.74 16 18 O -0.59 -12.56 17.44 5.29 0.09 -12.47 16 19 C 0.13 2.48 6.34 -2.53 -0.02 2.47 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 21 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.39 2.82 7.82 -40.82 -0.32 2.50 16 28 H 0.41 3.61 8.93 -40.82 -0.36 3.24 16 29 H 0.09 1.92 8.04 -51.93 -0.42 1.51 16 30 H 0.07 1.25 7.91 -51.93 -0.41 0.83 16 LS Contribution 261.19 15.07 3.94 3.94 Total: -1.00 -36.90 261.19 -5.57 -42.48 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.00 Total: 0.80 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.84 Total: 3.11 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.42 Total: -46.54 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.07 Total: -21.01 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -36.90 -5.57 -42.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.099 kcal (2) G-P(sol) polarization free energy of solvation -36.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds