Wall clock time and date at job start Thu Apr 9 2020 14:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48500 * 109.46823 * 270.00195 * 3 2 1 5 5 H 1.48494 * 109.46965 * 30.00007 * 3 2 1 6 6 H 1.48508 * 109.47058 * 150.00346 * 3 2 1 7 7 C 1.38638 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00095 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.42905 * 117.00184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.88834 * 308.87651 * 11 10 9 13 13 C 1.55157 * 111.00186 * 185.00155 * 11 10 9 14 14 C 1.54329 * 102.93961 * 206.41981 * 13 11 10 15 15 N 1.47020 * 107.27028 * 22.19446 * 14 13 11 16 16 C 1.34776 * 125.65045 * 181.01143 * 15 14 13 17 17 N 1.34778 * 119.99876 * 0.02562 * 16 15 14 18 18 O 1.21589 * 120.00419 * 180.02562 * 16 15 14 19 19 C 1.47420 * 108.70394 * 1.05708 * 15 14 13 20 20 H 0.97001 * 120.00204 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47103 * 300.00564 * 10 9 7 22 22 H 1.09004 * 109.47054 * 60.00068 * 10 9 7 23 23 H 1.08996 * 110.72196 * 324.78608 * 13 11 10 24 24 H 1.09005 * 110.71917 * 88.06307 * 13 11 10 25 25 H 1.08997 * 109.88151 * 141.60929 * 14 13 11 26 26 H 1.08993 * 109.88381 * 262.62088 * 14 13 11 27 27 H 0.97008 * 119.99722 * 359.97438 * 17 16 15 28 28 H 0.96998 * 120.00133 * 179.97438 * 17 16 15 29 29 H 1.09000 * 110.37115 * 217.03467 * 19 15 14 30 30 H 1.09005 * 110.36849 * 94.71343 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1127 -3.5676 -0.0005 11 6 1.1807 -4.7810 -0.0012 12 1 0.4367 -4.7000 0.7914 13 6 1.9862 -6.1010 0.1251 14 6 1.0648 -7.1347 -0.5562 15 7 0.1674 -6.3941 -1.4549 16 6 -0.8018 -6.9360 -2.2188 17 7 -1.0119 -8.2671 -2.1968 18 8 -1.4866 -6.2241 -2.9278 19 6 0.5039 -4.9606 -1.3829 20 1 -0.4850 0.8400 -0.0004 21 1 2.7416 -3.5925 -0.8905 22 1 2.7415 -3.5925 0.8895 23 1 2.9368 -6.0247 -0.4027 24 1 2.1450 -6.3572 1.1726 25 1 1.6625 -7.8427 -1.1301 26 1 0.4831 -7.6660 0.1970 27 1 -0.4653 -8.8351 -1.6314 28 1 -1.7096 -8.6571 -2.7463 29 1 -0.4004 -4.3551 -1.4439 30 1 1.1954 -4.6927 -2.1818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:22 Heat of formation + Delta-G solvation = -96.975726 kcal Electronic energy + Delta-G solvation = -14291.852086 eV Core-core repulsion = 11700.356310 eV Total energy + Delta-G solvation = -2591.495776 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.22851 -39.08677 -37.74090 -34.88052 -33.97110 -32.57773 -30.28760 -27.34225 -26.03323 -23.93706 -21.48365 -21.04932 -19.65078 -19.13177 -18.07132 -17.46225 -16.85556 -16.17175 -15.94832 -15.78847 -15.23818 -14.64848 -14.30375 -13.93936 -13.77113 -13.47491 -13.00043 -12.79515 -12.28805 -12.20729 -11.90652 -11.73241 -11.51249 -11.35301 -11.17004 -10.75529 -10.14081 -9.62261 -8.16325 -5.86450 1.40424 1.47602 1.56667 1.73343 2.08883 2.34305 3.16834 3.27211 3.56797 3.63552 3.77923 4.24875 4.29413 4.48859 4.53218 4.64851 4.80827 4.83571 4.90179 4.98428 5.13466 5.20476 5.25800 5.37420 5.97439 5.97640 6.21480 6.95197 7.26709 7.59187 8.08336 9.08899 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.051406 B = 0.006408 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.547708 B = 4368.715623 C = 4779.551248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.046 4.046 3 Si 1.007 2.993 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.377 4.377 8 H 0.077 0.923 9 O -0.341 6.341 10 C 0.078 3.922 11 C -0.089 4.089 12 H 0.073 0.927 13 C -0.109 4.109 14 C 0.099 3.901 15 N -0.637 5.637 16 C 0.711 3.289 17 N -0.838 5.838 18 O -0.653 6.653 19 C 0.138 3.862 20 H 0.259 0.741 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.415 0.585 28 H 0.422 0.578 29 H 0.035 0.965 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -18.246 0.916 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.239 4.239 3 Si 0.829 3.171 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.455 4.455 8 H 0.094 0.906 9 O -0.257 6.257 10 C 0.001 3.999 11 C -0.109 4.109 12 H 0.092 0.908 13 C -0.147 4.147 14 C -0.022 4.022 15 N -0.375 5.375 16 C 0.410 3.590 17 N -0.408 5.408 18 O -0.536 6.536 19 C 0.014 3.986 20 H 0.068 0.932 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.110 0.890 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.246 0.754 28 H 0.255 0.745 29 H 0.054 0.946 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.178 -17.653 0.483 18.403 hybrid contribution 0.092 0.667 -0.140 0.688 sum 5.270 -16.986 0.343 17.788 Atomic orbital electron populations 1.70218 1.07783 1.27171 1.53582 1.26284 0.96698 1.02266 0.98608 0.84741 0.77738 0.76118 0.78531 1.19813 1.20573 1.17809 1.21357 0.90966 0.83519 1.49699 0.90563 1.85589 1.34395 1.12109 1.93576 1.22308 0.93238 0.85395 0.98997 1.22207 0.98042 0.94834 0.95769 0.90833 1.22650 0.98076 0.90512 1.03449 1.22319 0.91922 0.95026 0.92964 1.47648 1.35588 1.08569 1.45730 1.15789 0.79767 0.83571 0.79826 1.42640 1.42329 1.04301 1.51520 1.90946 1.52554 1.62385 1.47688 1.21870 0.98605 0.80476 0.97665 0.93194 0.94982 0.93834 0.89038 0.86976 0.88315 0.89049 0.75389 0.74466 0.94630 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.14 13.67 21.61 0.30 -61.84 16 2 C -0.05 -2.76 5.49 84.83 0.47 -2.30 16 3 Si 1.01 45.87 29.55 68.60 2.03 47.90 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.38 -22.54 9.89 67.92 0.67 -21.87 16 8 H 0.08 4.17 7.77 -2.91 -0.02 4.15 16 9 O -0.34 -20.05 9.74 -81.92 -0.80 -20.85 16 10 C 0.08 3.29 5.47 71.98 0.39 3.69 16 11 C -0.09 -3.04 3.30 -9.40 -0.03 -3.08 16 12 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 13 C -0.11 -2.20 6.42 31.78 0.20 -2.00 16 14 C 0.10 1.73 6.15 86.73 0.53 2.27 16 15 N -0.64 -18.85 3.33 -829.77 -2.76 -21.61 16 16 C 0.71 22.63 8.76 179.05 1.57 24.20 16 17 N -0.84 -15.24 8.83 -184.74 -1.63 -16.88 16 18 O -0.65 -28.84 17.44 -4.00 -0.07 -28.91 16 19 C 0.14 5.29 6.34 86.86 0.55 5.84 16 20 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 21 H 0.03 1.30 7.96 -2.39 -0.02 1.28 16 22 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.09 1.65 8.04 -2.39 -0.02 1.63 16 24 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.41 4.23 7.82 -92.70 -0.72 3.50 16 28 H 0.42 6.47 8.93 -92.71 -0.83 5.64 16 29 H 0.03 1.70 8.04 -2.39 -0.02 1.68 16 30 H 0.06 2.26 7.91 -2.38 -0.02 2.24 16 Total: -1.00 -85.76 261.19 1.02 -84.74 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.40 Total: 10.69 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 4.36 Total: 6.75 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.10 Total: -100.33 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.87 Total: -49.75 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -85.76 1.02 -84.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.237 kcal (2) G-P(sol) polarization free energy of solvation -85.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds