Wall clock time and date at job start Thu Apr 9 2020 14:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.48655 * 2 1 4 4 O 1.42897 * 109.48279 * 120.03244 * 2 1 3 5 5 C 1.42898 * 114.10001 * 181.14372 * 4 2 1 6 6 C 1.53094 * 109.41211 * 298.84343 * 5 4 2 7 7 C 1.53175 * 109.16661 * 57.60371 * 6 5 4 8 8 C 1.53089 * 109.47744 * 239.97640 * 2 1 3 9 9 H 1.08994 * 109.57561 * 302.34100 * 8 2 1 10 10 C 1.50697 * 109.52591 * 62.50293 * 8 2 1 11 11 O 1.21221 * 119.99814 * 359.68169 * 10 8 2 12 12 O 1.34312 * 120.00556 * 179.68535 * 10 8 2 13 13 C 1.34914 * 117.00389 * 179.97438 * 12 10 8 14 14 H 1.08001 * 119.99883 * 359.97438 * 13 12 10 15 15 C 1.38748 * 120.00063 * 179.97438 * 13 12 10 16 16 N 1.31445 * 120.00234 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00261 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47234 * 89.99256 * 17 15 13 19 19 H 1.48493 * 109.47330 * 210.00112 * 17 15 13 20 20 H 1.48506 * 109.46471 * 329.99912 * 17 15 13 21 21 H 1.08996 * 109.46659 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46439 * 300.02630 * 1 2 3 23 23 H 1.09002 * 109.47283 * 60.02256 * 1 2 3 24 24 H 1.09006 * 109.48424 * 58.82186 * 5 4 2 25 25 H 1.09002 * 109.48282 * 178.85030 * 5 4 2 26 26 H 1.09004 * 109.51815 * 297.69832 * 6 5 4 27 27 H 1.09006 * 109.52300 * 177.51290 * 6 5 4 28 28 H 1.08997 * 109.54332 * 183.14837 * 7 6 5 29 29 H 1.09004 * 109.53853 * 62.89066 * 7 6 5 30 30 H 0.96998 * 120.00451 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0067 -0.6742 1.1663 5 6 3.4308 -0.7093 1.2790 6 6 4.0177 -1.4599 0.0807 7 6 3.5711 -0.7707 -1.2123 8 6 2.0405 -0.7222 -1.2496 9 1 1.6444 -1.7373 -1.2722 10 6 1.5902 0.0217 -2.4804 11 8 0.9216 1.0268 -2.3705 12 8 1.9296 -0.4290 -3.6993 13 6 1.4938 0.2832 -4.7590 14 1 0.8998 1.1719 -4.6049 15 6 1.8087 -0.1261 -6.0468 16 7 1.3837 0.5675 -7.0794 17 14 2.8355 -1.6636 -6.3135 18 1 1.9406 -2.8435 -6.4239 19 1 3.6241 -1.5216 -7.5637 20 1 3.7582 -1.8480 -5.1645 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3632 0.5143 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 3.8194 0.3090 1.2958 25 1 3.7101 -1.2202 2.2004 26 1 3.6614 -2.4901 0.0862 27 1 5.1060 -1.4496 0.1418 28 1 3.9392 -1.3324 -2.0708 29 1 3.9689 0.2437 -1.2409 30 1 1.6035 0.2812 -7.9797 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306358708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:54 Heat of formation + Delta-G solvation = -138.149959 kcal Electronic energy + Delta-G solvation = -14897.044654 eV Core-core repulsion = 12271.470678 eV Total energy + Delta-G solvation = -2625.573976 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.02653 -38.49359 -35.51547 -33.57785 -32.33486 -32.28686 -28.03158 -25.70541 -24.35732 -22.20949 -20.86625 -19.49374 -17.99468 -17.01091 -16.04894 -15.53540 -14.97535 -14.82871 -14.64772 -13.93733 -13.60891 -13.11757 -12.50440 -12.39642 -12.19733 -12.01978 -11.76277 -11.27725 -11.12266 -10.89335 -10.82959 -10.42905 -10.30907 -10.21686 -9.73399 -9.36012 -8.99922 -8.69224 -6.38517 -4.14142 3.11005 3.22122 3.32879 3.37594 3.75346 4.21409 4.27254 4.84282 4.92355 4.92969 5.06777 5.13574 5.32721 5.46565 5.62238 5.67829 5.80628 5.94623 5.95005 6.11076 6.16431 6.23719 6.39766 6.44028 6.68583 7.33827 7.73662 8.02270 8.60021 9.00049 9.67365 10.70012 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.009322 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.050907 B = 3003.066391 C = 3481.870053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 H 0.067 0.933 4 O -0.380 6.380 5 C 0.058 3.942 6 C -0.154 4.154 7 C -0.116 4.116 8 C -0.103 4.103 9 H 0.103 0.897 10 C 0.417 3.583 11 O -0.536 6.536 12 O -0.249 6.249 13 C -0.382 4.382 14 H 0.110 0.890 15 C 0.066 3.934 16 N -0.875 5.875 17 Si 0.904 3.096 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.260 1.260 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -5.065 12.934 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.085 0.915 4 O -0.299 6.299 5 C -0.018 4.018 6 C -0.192 4.192 7 C -0.153 4.153 8 C -0.122 4.122 9 H 0.121 0.879 10 C 0.263 3.737 11 O -0.432 6.432 12 O -0.157 6.157 13 C -0.458 4.458 14 H 0.127 0.873 15 C -0.138 4.138 16 N -0.514 5.514 17 Si 0.729 3.271 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.769 -4.869 12.844 14.541 hybrid contribution 0.642 -0.528 -0.605 1.028 sum 5.412 -5.397 12.239 14.430 Atomic orbital electron populations 1.21995 0.92341 1.02550 1.04009 1.21827 0.95773 0.94656 0.82627 0.91542 1.87927 1.20697 1.78414 1.42889 1.22573 0.81561 0.99590 0.98124 1.22217 1.01083 1.00646 0.95204 1.21594 0.93300 1.01966 0.98479 1.21478 0.97544 1.01245 0.91959 0.87933 1.22664 0.81087 0.85070 0.84898 1.90550 1.39195 1.26458 1.86963 1.83515 1.66016 1.51980 1.14197 1.20658 1.33631 1.09760 0.81707 0.87284 1.24543 0.96940 0.98555 0.93730 1.69606 1.44162 1.38957 0.98669 0.86237 0.80561 0.82163 0.78108 1.19853 1.20761 1.18423 0.92590 0.92365 0.88301 0.93234 0.89040 0.90857 0.90650 0.90001 0.91275 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.28 37.16 0.34 -2.13 16 2 C 0.11 1.80 2.40 -26.68 -0.06 1.73 16 3 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 4 O -0.38 -5.69 10.41 -35.23 -0.37 -6.06 16 5 C 0.06 0.69 6.84 37.21 0.25 0.94 16 6 C -0.15 -1.81 6.14 -26.59 -0.16 -1.98 16 7 C -0.12 -1.78 5.24 -26.55 -0.14 -1.92 16 8 C -0.10 -1.82 2.34 -91.64 -0.21 -2.04 16 9 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 10 C 0.42 9.73 6.93 36.00 0.25 9.98 16 11 O -0.54 -13.77 13.05 -19.06 -0.25 -14.02 16 12 O -0.25 -6.54 8.51 -20.69 -0.18 -6.72 16 13 C -0.38 -11.33 10.10 30.92 0.31 -11.02 16 14 H 0.11 3.56 7.09 -52.49 -0.37 3.19 16 15 C 0.07 1.89 5.49 -17.53 -0.10 1.79 16 16 N -0.87 -25.93 13.96 55.48 0.77 -25.16 16 17 Si 0.90 21.39 28.62 -169.99 -4.86 16.53 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.10 1.86 5.73 -51.93 -0.30 1.56 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 253.06 15.07 3.81 3.81 Total: -1.00 -31.51 253.06 -4.61 -36.12 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.03 Total: 0.13 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 0.48 Total: -4.62 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.77 Total: -25.16 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.79 Total: -26.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.51 -4.61 -36.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.035 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds