Wall clock time and date at job start Thu Apr 9 2020 14:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.48655 * 2 1 4 4 O 1.42897 * 109.48279 * 120.03244 * 2 1 3 5 5 C 1.42898 * 114.10001 * 181.14372 * 4 2 1 6 6 C 1.53094 * 109.41211 * 298.84343 * 5 4 2 7 7 C 1.53175 * 109.16661 * 57.60371 * 6 5 4 8 8 C 1.53089 * 109.47744 * 239.97640 * 2 1 3 9 9 H 1.08994 * 109.57561 * 302.34100 * 8 2 1 10 10 C 1.50697 * 109.52591 * 62.50293 * 8 2 1 11 11 O 1.21221 * 119.99814 * 359.68169 * 10 8 2 12 12 O 1.34312 * 120.00556 * 179.68535 * 10 8 2 13 13 C 1.34914 * 117.00389 * 179.97438 * 12 10 8 14 14 H 1.08001 * 119.99883 * 359.97438 * 13 12 10 15 15 C 1.38748 * 120.00063 * 179.97438 * 13 12 10 16 16 N 1.31445 * 120.00234 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00261 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47234 * 89.99256 * 17 15 13 19 19 H 1.48493 * 109.47330 * 210.00112 * 17 15 13 20 20 H 1.48506 * 109.46471 * 329.99912 * 17 15 13 21 21 H 1.08996 * 109.46659 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46439 * 300.02630 * 1 2 3 23 23 H 1.09002 * 109.47283 * 60.02256 * 1 2 3 24 24 H 1.09006 * 109.48424 * 58.82186 * 5 4 2 25 25 H 1.09002 * 109.48282 * 178.85030 * 5 4 2 26 26 H 1.09004 * 109.51815 * 297.69832 * 6 5 4 27 27 H 1.09006 * 109.52300 * 177.51290 * 6 5 4 28 28 H 1.08997 * 109.54332 * 183.14837 * 7 6 5 29 29 H 1.09004 * 109.53853 * 62.89066 * 7 6 5 30 30 H 0.96998 * 120.00451 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0067 -0.6742 1.1663 5 6 3.4308 -0.7093 1.2790 6 6 4.0177 -1.4599 0.0807 7 6 3.5711 -0.7707 -1.2123 8 6 2.0405 -0.7222 -1.2496 9 1 1.6444 -1.7373 -1.2722 10 6 1.5902 0.0217 -2.4804 11 8 0.9216 1.0268 -2.3705 12 8 1.9296 -0.4290 -3.6993 13 6 1.4938 0.2832 -4.7590 14 1 0.8998 1.1719 -4.6049 15 6 1.8087 -0.1261 -6.0468 16 7 1.3837 0.5675 -7.0794 17 14 2.8355 -1.6636 -6.3135 18 1 1.9406 -2.8435 -6.4239 19 1 3.6241 -1.5216 -7.5637 20 1 3.7582 -1.8480 -5.1645 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3632 0.5143 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 3.8194 0.3090 1.2958 25 1 3.7101 -1.2202 2.2004 26 1 3.6614 -2.4901 0.0862 27 1 5.1060 -1.4496 0.1418 28 1 3.9392 -1.3324 -2.0708 29 1 3.9689 0.2437 -1.2409 30 1 1.6035 0.2812 -7.9797 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306358708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:54 Heat of formation + Delta-G solvation = -159.208676 kcal Electronic energy + Delta-G solvation = -14897.957829 eV Core-core repulsion = 12271.470678 eV Total energy + Delta-G solvation = -2626.487151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.68250 -40.02507 -37.48853 -34.87889 -34.44100 -33.59281 -29.39864 -27.59983 -25.73904 -23.58358 -22.23380 -21.06141 -20.17026 -18.78985 -17.25414 -17.20501 -16.78424 -16.29396 -15.97580 -15.62832 -14.92529 -14.73000 -14.38807 -13.88183 -13.66026 -13.42501 -13.21352 -12.92904 -12.53326 -12.34146 -12.19988 -11.99589 -11.98149 -11.86081 -11.35060 -10.92889 -10.84307 -10.48218 -8.56709 -6.43521 1.25348 1.31936 1.49510 1.54424 2.20417 2.27953 2.88722 2.90506 3.50805 3.68356 3.85793 4.02241 4.10359 4.34269 4.42714 4.43762 4.60986 4.77322 4.78823 4.89348 4.92237 5.05294 5.09220 5.28531 5.29353 5.50391 5.87156 6.20238 6.51158 6.80452 7.56316 8.56243 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.009322 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.050907 B = 3003.066391 C = 3481.870053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.115 3.885 3 H 0.054 0.946 4 O -0.383 6.383 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.117 4.117 8 C -0.096 4.096 9 H 0.119 0.881 10 C 0.417 3.583 11 O -0.564 6.564 12 O -0.254 6.254 13 C -0.409 4.409 14 H 0.058 0.942 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.981 3.019 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.248 1.248 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -7.445 14.477 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 H 0.072 0.928 4 O -0.302 6.302 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.155 4.155 8 C -0.116 4.116 9 H 0.137 0.863 10 C 0.264 3.736 11 O -0.460 6.460 12 O -0.163 6.163 13 C -0.485 4.485 14 H 0.076 0.924 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.171 1.171 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.142 0.858 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.671 -7.230 14.410 17.448 hybrid contribution -0.007 0.320 -0.975 1.026 sum 6.664 -6.910 13.435 16.512 Atomic orbital electron populations 1.21915 0.92586 1.03086 1.03232 1.21628 0.95747 0.94046 0.82850 0.92822 1.87929 1.22931 1.77964 1.41377 1.22921 0.79671 1.00550 0.99637 1.22201 1.02869 1.00424 0.92582 1.21659 0.90930 1.02188 1.00743 1.21662 0.99719 1.01086 0.89089 0.86270 1.24026 0.79331 0.84747 0.85502 1.90547 1.40076 1.28027 1.87356 1.83526 1.66662 1.51739 1.14423 1.20329 1.34948 1.09471 0.83707 0.92438 1.25573 0.97823 1.02339 0.92667 1.69705 1.45330 1.41074 0.99576 0.85105 0.78869 0.77036 0.78911 1.18490 1.18983 1.17124 0.91391 0.90592 0.91593 0.92742 0.85750 0.89909 0.87749 0.90461 0.91967 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.28 71.98 0.67 -4.17 16 2 C 0.12 3.68 2.40 30.63 0.07 3.75 16 3 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16 4 O -0.38 -10.31 10.41 -148.98 -1.55 -11.86 16 5 C 0.05 0.95 6.84 72.01 0.49 1.44 16 6 C -0.14 -2.78 6.14 30.68 0.19 -2.59 16 7 C -0.12 -3.34 5.24 30.71 0.16 -3.18 16 8 C -0.10 -3.30 2.34 -11.45 -0.03 -3.33 16 9 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 10 C 0.42 19.86 6.93 71.23 0.49 20.35 16 11 O -0.56 -30.39 13.05 20.74 0.27 -30.12 16 12 O -0.25 -13.60 8.51 14.92 0.13 -13.48 16 13 C -0.41 -25.27 10.10 67.94 0.69 -24.58 16 14 H 0.06 4.04 7.09 -2.91 -0.02 4.02 16 15 C 0.02 0.93 5.49 84.87 0.47 1.39 16 16 N -0.92 -55.69 13.96 21.62 0.30 -55.38 16 17 Si 0.98 43.47 28.62 68.60 1.96 45.43 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.07 2.56 5.73 -2.39 -0.01 2.55 16 24 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.29 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -71.03 253.06 5.44 -65.59 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.12 Total: 10.73 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 3.20 Total: -10.92 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.30 Total: -55.38 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -1.15 Total: -55.46 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.96 Total: 45.43 kcal Total: -71.03 5.44 -65.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.616 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds