Wall clock time and date at job start Thu Apr 9 2020 14:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47074 * 2 1 4 4 C 1.50702 * 109.47193 * 239.99677 * 2 1 3 5 5 H 1.08003 * 119.99987 * 240.00329 * 4 2 1 6 6 C 1.37879 * 119.99726 * 60.00291 * 4 2 1 7 7 N 1.31514 * 120.00232 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99684 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47259 * 90.00165 * 8 6 4 10 10 H 1.48502 * 109.47061 * 210.00166 * 8 6 4 11 11 H 1.48496 * 109.47388 * 330.00050 * 8 6 4 12 12 N 1.46904 * 109.46941 * 120.00053 * 2 1 3 13 13 C 1.46901 * 111.00103 * 58.95118 * 12 2 1 14 14 C 1.46900 * 110.99870 * 295.00240 * 12 2 1 15 15 H 1.08996 * 110.90701 * 56.12952 * 14 12 2 16 16 C 1.55380 * 111.17219 * 292.11059 * 14 12 2 17 17 N 1.47844 * 104.83918 * 204.90444 * 16 14 12 18 18 C 1.47443 * 108.56494 * 24.09964 * 17 16 14 19 19 C 1.54312 * 107.23612 * 359.01050 * 18 17 16 20 20 H 1.09002 * 110.70596 * 96.10119 * 19 18 17 21 21 O 1.42903 * 110.70611 * 219.15956 * 19 18 17 22 22 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47188 * 300.00099 * 1 2 3 24 24 H 1.09004 * 109.46696 * 60.00466 * 1 2 3 25 25 H 0.96991 * 119.99787 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47530 * 296.04779 * 13 12 2 27 27 H 1.09003 * 109.47054 * 56.04763 * 13 12 2 28 28 H 1.09002 * 109.47363 * 176.04588 * 13 12 2 29 29 H 1.08999 * 110.35214 * 86.05688 * 16 14 12 30 30 H 1.09007 * 110.44781 * 323.79561 * 16 14 12 31 31 H 1.00900 * 110.99406 * 261.82694 * 17 16 14 32 32 H 1.08997 * 109.88254 * 239.60085 * 18 17 16 33 33 H 1.09003 * 109.88840 * 118.42215 * 18 17 16 34 34 H 0.96698 * 114.00097 * 296.19853 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 1 0.5704 0.1907 2.4676 16 6 2.4063 1.3923 2.5128 17 7 2.4417 1.7062 3.9571 18 6 2.3121 0.4477 4.7143 19 6 2.1658 -0.6924 3.6847 20 1 3.1298 -1.1631 3.4913 21 8 1.2144 -1.6596 4.1335 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 0.7091 1.1613 -3.4844 26 1 0.4419 -2.0731 1.3348 27 1 1.8167 -2.5951 0.3319 28 1 1.9616 -2.5869 2.1059 29 1 1.8668 2.1678 1.9690 30 1 3.4187 1.2902 2.1218 31 1 1.7088 2.3542 4.2043 32 1 1.4285 0.4877 5.3513 33 1 3.2028 0.2869 5.3217 34 1 1.4731 -2.1192 4.9440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306272050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:00 Heat of formation + Delta-G solvation = -34.601327 kcal Electronic energy + Delta-G solvation = -15378.328109 eV Core-core repulsion = 12925.370185 eV Total energy + Delta-G solvation = -2452.957925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.18037 -36.21372 -35.20421 -32.56726 -29.12020 -28.08137 -27.53690 -25.19033 -24.18296 -21.54551 -20.59182 -18.77083 -17.28403 -16.27785 -15.85891 -15.65695 -14.73623 -14.08144 -13.49952 -13.27582 -12.92765 -12.75957 -12.37948 -12.15301 -11.96740 -11.53103 -11.06691 -10.92608 -10.71375 -10.64511 -10.50811 -10.29935 -10.00774 -9.92108 -9.64878 -8.84601 -8.37667 -8.31381 -7.15082 -6.00137 -4.03533 3.31764 3.38301 3.42503 4.17652 4.38558 4.56015 4.82926 5.04350 5.24437 5.30523 5.32371 5.71603 5.85251 5.90043 5.97416 6.27436 6.35638 6.51288 6.61731 6.70200 6.85680 6.91850 6.96891 7.14509 7.44220 7.51548 7.72537 7.78353 7.84891 8.12580 8.39109 8.60723 9.02216 9.61261 11.07137 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047347 B = 0.008481 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.235426 B = 3300.682795 C = 3529.691892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.041 0.959 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.524 5.524 13 C 0.041 3.959 14 C 0.061 3.939 15 H 0.051 0.949 16 C 0.058 3.942 17 N -0.681 5.681 18 C 0.018 3.982 19 C 0.085 3.915 20 H 0.075 0.925 21 O -0.559 6.559 22 H 0.030 0.970 23 H 0.005 0.995 24 H 0.088 0.912 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.336 0.664 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -1.489 11.705 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.248 5.248 13 C -0.108 4.108 14 C -0.050 4.050 15 H 0.068 0.932 16 C -0.071 4.071 17 N -0.309 5.309 18 C -0.112 4.112 19 C 0.025 3.975 20 H 0.093 0.907 21 O -0.363 6.363 22 H 0.049 0.951 23 H 0.024 0.976 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.151 0.849 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.820 -1.135 11.042 11.249 hybrid contribution -1.372 -0.782 -0.454 1.643 sum 0.448 -1.917 10.589 10.770 Atomic orbital electron populations 1.22393 1.00997 0.99410 1.00274 1.19324 0.89672 0.94690 0.85939 0.94109 1.21116 1.30548 1.12445 0.89648 0.91922 1.24927 0.95263 0.95129 0.98999 1.69883 1.37130 1.23027 1.23375 0.86519 0.79238 0.79260 0.82520 1.20869 1.21295 1.19841 1.62442 1.59027 1.02087 1.01222 1.22174 0.97126 0.90501 1.00950 1.23179 0.97705 0.93910 0.90244 0.93176 1.22940 1.01802 0.95043 0.87298 1.61776 1.51749 1.11831 1.05569 1.23282 1.00976 0.90216 0.96771 1.23176 0.92420 0.88321 0.93556 0.90662 1.86621 1.47670 1.55691 1.46296 0.95103 0.97615 0.89349 0.93028 0.96541 0.91128 0.93458 0.91021 0.89045 0.84919 0.92457 0.90805 0.78364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.29 37.16 0.31 -3.95 16 2 C 0.21 5.29 2.24 -68.86 -0.15 5.14 16 3 H 0.04 1.11 7.16 -51.93 -0.37 0.74 16 4 C -0.50 -13.70 7.88 -34.44 -0.27 -13.98 16 5 H 0.06 1.73 6.77 -52.48 -0.36 1.37 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.52 -11.45 4.65 -225.43 -1.05 -12.50 16 13 C 0.04 0.86 8.15 60.07 0.49 1.35 16 14 C 0.06 1.14 2.21 -65.32 -0.14 0.99 16 15 H 0.05 1.04 6.37 -51.93 -0.33 0.71 16 16 C 0.06 1.01 6.32 -2.04 -0.01 0.99 16 17 N -0.68 -9.79 7.39 -110.51 -0.82 -10.61 16 18 C 0.02 0.23 7.36 -2.84 -0.02 0.21 16 19 C 0.09 1.31 2.95 -24.91 -0.07 1.23 16 20 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 21 O -0.56 -8.08 12.02 -35.23 -0.42 -8.50 16 22 H 0.03 0.75 6.48 -51.93 -0.34 0.42 16 23 H 0.00 0.11 6.47 -51.93 -0.34 -0.22 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.35 6.51 -51.93 -0.34 0.01 16 27 H 0.07 1.56 6.41 -51.93 -0.33 1.22 16 28 H 0.05 0.89 6.37 -51.93 -0.33 0.56 16 29 H 0.07 1.26 7.94 -51.93 -0.41 0.85 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.34 4.26 8.91 -39.29 -0.35 3.91 16 32 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.37 3.44 9.12 45.56 0.42 3.85 16 LS Contribution 262.25 15.07 3.95 3.95 Total: -1.00 -29.53 262.25 -6.92 -36.45 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.21 Total: 6.18 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.03 Total: -6.51 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -1.24 Total: -47.99 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.42 Total: -8.50 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.53 -6.92 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306272050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.845 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds