Wall clock time and date at job start Thu Apr 9 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 N 1.46495 * 109.46885 * 120.00110 * 2 1 3 5 5 C 1.36942 * 120.00152 * 306.04980 * 4 2 1 6 6 H 1.07998 * 120.00338 * 125.45556 * 5 4 2 7 7 C 1.38811 * 119.99728 * 305.45622 * 5 4 2 8 8 N 1.31618 * 120.00006 * 323.30940 * 7 5 4 9 9 Si 1.86800 * 119.99768 * 143.31174 * 7 5 4 10 10 H 1.48499 * 109.47378 * 60.00017 * 9 7 5 11 11 H 1.48502 * 109.47183 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47202 * 299.99674 * 9 7 5 13 13 C 1.46502 * 120.00240 * 126.04803 * 4 2 1 14 14 H 1.09000 * 110.76285 * 1.74903 * 13 4 2 15 15 C 1.54308 * 110.71019 * 238.54627 * 13 4 2 16 16 N 1.47441 * 107.23652 * 219.33436 * 15 13 4 17 17 C 1.47850 * 108.56542 * 359.00591 * 16 15 13 18 18 C 1.54903 * 104.79363 * 24.10204 * 17 16 15 19 19 H 1.08999 * 110.99669 * 81.05192 * 18 17 16 20 20 O 1.42895 * 110.98924 * 204.83757 * 18 17 16 21 21 H 1.08994 * 109.46903 * 295.78502 * 1 2 3 22 22 H 1.08998 * 109.46723 * 55.77935 * 1 2 3 23 23 H 1.08998 * 109.47010 * 175.77614 * 1 2 3 24 24 H 1.08998 * 109.46937 * 240.00177 * 2 1 3 25 25 H 1.09002 * 109.47090 * 172.19271 * 3 2 1 26 26 H 1.08998 * 109.47549 * 292.19179 * 3 2 1 27 27 H 1.09004 * 109.46989 * 52.19161 * 3 2 1 28 28 H 0.97003 * 119.99926 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.88975 * 99.92749 * 15 13 4 30 30 H 1.09000 * 109.88867 * 338.74150 * 15 13 4 31 31 H 1.00896 * 111.00524 * 121.27701 * 16 15 13 32 32 H 1.09000 * 110.36747 * 142.92379 * 17 16 15 33 33 H 1.08998 * 110.37422 * 265.26739 * 17 16 15 34 34 H 0.96704 * 114.00095 * 298.53875 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5885 -0.2994 2.4361 6 1 1.1454 -1.0208 3.1066 7 6 1.7224 1.0246 2.8312 8 7 2.7832 1.7150 2.4702 9 14 0.3971 1.8262 3.8754 10 1 0.2566 1.0829 5.1533 11 1 0.7756 3.2335 4.1610 12 1 -0.8942 1.7994 3.1425 13 6 2.9664 -1.7999 1.0659 14 1 3.2287 -1.9632 0.0206 15 6 2.3894 -3.0872 1.6912 16 7 3.4971 -3.7713 2.3831 17 6 4.7312 -2.9796 2.1932 18 6 4.2375 -1.5378 1.9159 19 1 3.9878 -1.0251 2.8448 20 8 5.2078 -0.7988 1.1714 21 1 -0.3633 0.4470 0.9253 22 1 -0.3633 0.5779 -0.8498 23 1 -0.3633 -1.0249 -0.0757 24 1 1.8934 -0.5138 -0.8900 25 1 3.1211 1.4456 0.1396 26 1 1.7952 1.9145 -0.9515 27 1 1.5672 1.9950 0.8120 28 1 2.8770 2.6401 2.7466 29 1 1.9867 -3.7310 0.9092 30 1 1.6062 -2.8336 2.4056 31 1 3.2918 -3.8913 3.3637 32 1 5.3409 -3.0048 3.0964 33 1 5.2971 -3.3574 1.3416 34 1 6.0551 -0.6933 1.6254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306415149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:27 Heat of formation + Delta-G solvation = -14.958209 kcal Electronic energy + Delta-G solvation = -15839.926917 eV Core-core repulsion = 13387.820782 eV Total energy + Delta-G solvation = -2452.106135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -38.39805 -35.79590 -34.54615 -31.69406 -30.54994 -27.29258 -26.76039 -25.74428 -23.79740 -20.87256 -19.69795 -19.50212 -16.60491 -16.17639 -15.91220 -14.48271 -14.18059 -13.88849 -13.47412 -13.08416 -12.64060 -12.41379 -11.97166 -11.85202 -11.51738 -11.17688 -11.06555 -10.85360 -10.70431 -10.57612 -10.49653 -10.10223 -9.75762 -9.60502 -9.43117 -9.18416 -8.04498 -7.77368 -6.44875 -5.73581 -3.49761 3.30562 3.38832 3.43825 4.41280 4.74951 5.05368 5.13121 5.47177 5.67346 5.84178 5.95218 6.15416 6.21045 6.25695 6.51670 6.54766 6.59395 6.70030 6.73229 6.80290 6.97709 7.18178 7.19092 7.25038 7.38903 7.57780 7.82259 7.86771 8.01309 8.52920 8.62273 9.21178 9.74923 10.52614 11.01825 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.013084 C = 0.012359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.256997 B = 2139.561603 C = 2265.014400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.180 3.820 3 C -0.143 4.143 4 N -0.565 5.565 5 C -0.299 4.299 6 H 0.048 0.952 7 C 0.057 3.943 8 N -0.827 5.827 9 Si 0.862 3.138 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.166 3.834 14 H 0.059 0.941 15 C 0.034 3.966 16 N -0.682 5.682 17 C 0.010 3.990 18 C 0.071 3.929 19 H 0.082 0.918 20 O -0.550 6.550 21 H 0.061 0.939 22 H 0.032 0.968 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.003 0.997 27 H 0.066 0.934 28 H 0.254 0.746 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.332 0.668 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -4.527 -1.019 4.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.074 3.926 3 C -0.202 4.202 4 N -0.285 5.285 5 C -0.428 4.428 6 H 0.065 0.935 7 C -0.151 4.151 8 N -0.462 5.462 9 Si 0.689 3.311 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.203 1.203 13 C 0.057 3.943 14 H 0.077 0.923 15 C -0.097 4.097 16 N -0.311 5.311 17 C -0.121 4.121 18 C 0.009 3.991 19 H 0.100 0.900 20 O -0.352 6.352 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.070 -4.774 -1.993 5.283 hybrid contribution -0.351 1.359 1.665 2.177 sum 0.719 -3.415 -0.329 3.505 Atomic orbital electron populations 1.22056 0.98353 0.99668 1.00516 1.20357 0.91523 0.92741 0.87942 1.22403 1.02944 0.97458 0.97410 1.43693 1.47168 1.35610 1.02051 1.18281 1.37441 0.92965 0.94106 0.93455 1.25341 0.94724 0.99518 0.95487 1.70502 1.22734 1.09635 1.43346 0.87093 0.84538 0.78491 0.80953 1.20515 1.21750 1.20340 1.21501 0.87784 0.88794 0.96188 0.92317 1.23015 0.93640 0.94445 0.98621 1.61756 1.03614 1.48858 1.16906 1.23567 0.93168 0.94637 1.00678 1.23942 0.89682 0.88409 0.97059 0.90014 1.86541 1.25163 1.76915 1.46549 0.92002 0.94936 0.94316 0.94700 0.91733 0.97812 0.91501 0.93567 0.92128 0.91523 0.85401 0.92704 0.91068 0.79738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.14 37.16 0.34 -2.73 16 2 C 0.18 4.13 3.36 -67.93 -0.23 3.90 16 3 C -0.14 -3.42 7.67 37.16 0.29 -3.13 16 4 N -0.56 -13.48 2.42 -156.10 -0.38 -13.86 16 5 C -0.30 -7.65 6.15 -15.06 -0.09 -7.75 16 6 H 0.05 1.26 6.99 -52.49 -0.37 0.89 16 7 C 0.06 1.47 3.58 -17.43 -0.06 1.41 16 8 N -0.83 -22.25 10.50 55.49 0.58 -21.66 16 9 Si 0.86 20.31 29.68 -169.99 -5.04 15.26 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.17 3.62 3.23 -66.11 -0.21 3.41 16 14 H 0.06 1.31 7.65 -51.93 -0.40 0.91 16 15 C 0.03 0.65 7.21 -2.84 -0.02 0.63 16 16 N -0.68 -11.89 7.39 -110.80 -0.82 -12.71 16 17 C 0.01 0.17 7.30 -2.30 -0.02 0.16 16 18 C 0.07 1.49 3.94 -24.59 -0.10 1.39 16 19 H 0.08 1.98 7.15 -51.93 -0.37 1.61 16 20 O -0.55 -11.55 13.47 -35.23 -0.47 -12.02 16 21 H 0.06 1.41 7.37 -51.93 -0.38 1.03 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.76 7.61 -51.93 -0.40 0.37 16 25 H 0.06 1.70 7.52 -51.93 -0.39 1.31 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.07 1.71 5.34 -51.93 -0.28 1.43 16 28 H 0.25 6.69 8.31 -40.82 -0.34 6.36 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.37 6.48 -51.93 -0.34 1.04 16 31 H 0.33 5.31 8.91 -39.29 -0.35 4.96 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.36 5.86 9.11 45.56 0.42 6.27 16 LS Contribution 267.67 15.07 4.03 4.03 Total: -1.00 -27.59 267.67 -6.73 -34.32 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.52 Total: 9.35 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.11 Total: -2.72 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.61 Total: -48.23 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.47 Total: -12.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.04 Total: 15.26 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.59 -6.73 -34.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306415149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.364 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds