Wall clock time and date at job start Thu Apr 9 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 N 1.46495 * 109.46885 * 120.00110 * 2 1 3 5 5 C 1.36942 * 120.00152 * 306.04980 * 4 2 1 6 6 H 1.07998 * 120.00338 * 125.45556 * 5 4 2 7 7 C 1.38811 * 119.99728 * 305.45622 * 5 4 2 8 8 N 1.31618 * 120.00006 * 323.30940 * 7 5 4 9 9 Si 1.86800 * 119.99768 * 143.31174 * 7 5 4 10 10 H 1.48499 * 109.47378 * 60.00017 * 9 7 5 11 11 H 1.48502 * 109.47183 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47202 * 299.99674 * 9 7 5 13 13 C 1.46502 * 120.00240 * 126.04803 * 4 2 1 14 14 H 1.09000 * 110.76285 * 1.74903 * 13 4 2 15 15 C 1.54308 * 110.71019 * 238.54627 * 13 4 2 16 16 N 1.47441 * 107.23652 * 219.33436 * 15 13 4 17 17 C 1.47850 * 108.56542 * 359.00591 * 16 15 13 18 18 C 1.54903 * 104.79363 * 24.10204 * 17 16 15 19 19 H 1.08999 * 110.99669 * 81.05192 * 18 17 16 20 20 O 1.42895 * 110.98924 * 204.83757 * 18 17 16 21 21 H 1.08994 * 109.46903 * 295.78502 * 1 2 3 22 22 H 1.08998 * 109.46723 * 55.77935 * 1 2 3 23 23 H 1.08998 * 109.47010 * 175.77614 * 1 2 3 24 24 H 1.08998 * 109.46937 * 240.00177 * 2 1 3 25 25 H 1.09002 * 109.47090 * 172.19271 * 3 2 1 26 26 H 1.08998 * 109.47549 * 292.19179 * 3 2 1 27 27 H 1.09004 * 109.46989 * 52.19161 * 3 2 1 28 28 H 0.97003 * 119.99926 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.88975 * 99.92749 * 15 13 4 30 30 H 1.09000 * 109.88867 * 338.74150 * 15 13 4 31 31 H 1.00896 * 111.00524 * 121.27701 * 16 15 13 32 32 H 1.09000 * 110.36747 * 142.92379 * 17 16 15 33 33 H 1.08998 * 110.37422 * 265.26739 * 17 16 15 34 34 H 0.96704 * 114.00095 * 298.53875 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5885 -0.2994 2.4361 6 1 1.1454 -1.0208 3.1066 7 6 1.7224 1.0246 2.8312 8 7 2.7832 1.7150 2.4702 9 14 0.3971 1.8262 3.8754 10 1 0.2566 1.0829 5.1533 11 1 0.7756 3.2335 4.1610 12 1 -0.8942 1.7994 3.1425 13 6 2.9664 -1.7999 1.0659 14 1 3.2287 -1.9632 0.0206 15 6 2.3894 -3.0872 1.6912 16 7 3.4971 -3.7713 2.3831 17 6 4.7312 -2.9796 2.1932 18 6 4.2375 -1.5378 1.9159 19 1 3.9878 -1.0251 2.8448 20 8 5.2078 -0.7988 1.1714 21 1 -0.3633 0.4470 0.9253 22 1 -0.3633 0.5779 -0.8498 23 1 -0.3633 -1.0249 -0.0757 24 1 1.8934 -0.5138 -0.8900 25 1 3.1211 1.4456 0.1396 26 1 1.7952 1.9145 -0.9515 27 1 1.5672 1.9950 0.8120 28 1 2.8770 2.6401 2.7466 29 1 1.9867 -3.7310 0.9092 30 1 1.6062 -2.8336 2.4056 31 1 3.2918 -3.8913 3.3637 32 1 5.3409 -3.0048 3.0964 33 1 5.2971 -3.3574 1.3416 34 1 6.0551 -0.6933 1.6254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306415149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:26 Heat of formation + Delta-G solvation = -36.372855 kcal Electronic energy + Delta-G solvation = -15840.855526 eV Core-core repulsion = 13387.820782 eV Total energy + Delta-G solvation = -2453.034744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -40.03260 -37.57903 -36.14783 -33.64639 -32.29175 -28.83739 -28.54141 -27.51812 -25.68726 -22.38970 -21.54530 -21.22396 -18.26193 -17.99768 -17.59835 -16.41720 -15.89403 -15.56764 -15.06149 -14.81505 -14.39527 -14.23067 -13.55901 -13.50648 -13.14623 -12.99339 -12.88024 -12.68556 -12.60863 -12.30078 -12.20539 -11.92666 -11.57034 -11.43076 -11.13486 -10.84741 -9.93955 -9.36137 -8.39156 -7.64384 -5.48730 1.41109 1.48202 1.52555 2.48658 3.12961 3.24942 3.44910 3.93063 4.06015 4.27670 4.42387 4.51286 4.52900 4.69167 4.76384 4.84374 4.99073 5.01534 5.09938 5.18484 5.20568 5.38391 5.39062 5.49384 5.72607 5.80885 5.89340 6.04703 6.48789 6.61062 7.08584 7.29268 7.85652 8.58855 9.03164 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.013084 C = 0.012359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.256997 B = 2139.561603 C = 2265.014400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 C -0.129 4.129 4 N -0.575 5.575 5 C -0.295 4.295 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.852 5.852 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.277 1.277 13 C 0.155 3.845 14 H 0.053 0.947 15 C 0.046 3.954 16 N -0.675 5.675 17 C 0.024 3.976 18 C 0.075 3.925 19 H 0.044 0.956 20 O -0.569 6.569 21 H 0.038 0.962 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.031 0.969 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.249 0.751 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.342 0.658 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -5.552 -1.266 5.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 C -0.188 4.188 4 N -0.296 5.296 5 C -0.424 4.424 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.488 5.488 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.203 1.203 13 C 0.046 3.954 14 H 0.071 0.929 15 C -0.085 4.085 16 N -0.305 5.305 17 C -0.106 4.106 18 C 0.013 3.987 19 H 0.062 0.938 20 O -0.374 6.374 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.849 -5.818 -2.226 6.287 hybrid contribution -0.227 1.661 1.706 2.392 sum 0.622 -4.157 -0.520 4.235 Atomic orbital electron populations 1.21918 0.96617 1.00601 1.00329 1.20499 0.92961 0.92004 0.88010 1.22201 1.00460 0.98359 0.97749 1.43829 1.47857 1.36091 1.01816 1.18247 1.36752 0.92837 0.94576 0.94587 1.25768 0.95702 0.99941 0.96595 1.70588 1.23811 1.09416 1.44987 0.86332 0.82626 0.77420 0.79880 1.20271 1.22269 1.20294 1.21694 0.88211 0.89197 0.96257 0.92908 1.22809 0.93636 0.93520 0.98492 1.61779 1.03028 1.48014 1.17646 1.23472 0.93244 0.91675 1.02225 1.23727 0.89821 0.90111 0.95007 0.93800 1.86488 1.26333 1.77341 1.47206 0.94285 0.92524 0.93209 0.93692 0.94960 0.95553 0.93500 0.94096 0.91045 0.93014 0.84285 0.90249 0.90176 0.77574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.14 71.98 0.66 -4.78 16 2 C 0.17 7.67 3.36 44.99 0.15 7.82 16 3 C -0.13 -6.10 7.67 71.98 0.55 -5.54 16 4 N -0.57 -27.29 2.42 -647.77 -1.57 -28.85 16 5 C -0.29 -15.10 6.15 84.03 0.52 -14.59 16 6 H 0.04 1.93 6.99 -2.91 -0.02 1.91 16 7 C 0.03 1.31 3.58 84.86 0.30 1.61 16 8 N -0.85 -46.51 10.50 21.65 0.23 -46.28 16 9 Si 0.91 41.96 29.68 68.60 2.04 44.00 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.15 6.63 3.23 46.17 0.15 6.78 16 14 H 0.05 2.31 7.65 -2.39 -0.02 2.29 16 15 C 0.05 1.73 7.21 86.64 0.62 2.35 16 16 N -0.68 -21.93 7.39 -504.45 -3.73 -25.66 16 17 C 0.02 0.78 7.30 86.77 0.63 1.41 16 18 C 0.08 3.10 3.94 31.98 0.13 3.23 16 19 H 0.04 2.15 7.15 -2.39 -0.02 2.13 16 20 O -0.57 -23.61 13.47 -148.98 -2.01 -25.62 16 21 H 0.04 1.72 7.37 -2.39 -0.02 1.70 16 22 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.91 7.61 -2.39 -0.02 1.89 16 25 H 0.03 1.70 7.52 -2.39 -0.02 1.68 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 2.39 5.34 -2.38 -0.01 2.38 16 28 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 2.08 6.48 -2.39 -0.02 2.07 16 31 H 0.34 10.12 8.91 -89.70 -0.80 9.32 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.38 12.02 9.11 -74.05 -0.67 11.34 16 Total: -1.00 -58.08 267.67 -1.70 -59.78 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.38 Total: 24.35 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 3.72 Total: -1.71 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -5.07 Total: -100.80 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -2.01 Total: -25.62 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.04 Total: 44.00 kcal Total: -58.08 -1.70 -59.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306415149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.406 kcal (2) G-P(sol) polarization free energy of solvation -58.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds