Wall clock time and date at job start Thu Apr 9 2020 14:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46829 * 2 1 4 4 C 1.50699 * 109.47286 * 239.99334 * 2 1 3 5 5 H 1.07996 * 119.99820 * 239.99905 * 4 2 1 6 6 C 1.37881 * 119.99855 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00088 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47089 * 90.00091 * 8 6 4 10 10 H 1.48491 * 109.47297 * 210.00371 * 8 6 4 11 11 H 1.48509 * 109.46988 * 330.00295 * 8 6 4 12 12 N 1.46898 * 109.46719 * 119.99439 * 2 1 3 13 13 C 1.40017 * 111.00151 * 289.45704 * 12 2 1 14 14 C 1.54205 * 112.08511 * 188.09981 * 13 12 2 15 15 N 1.44580 * 108.84543 * 281.18244 * 14 13 12 16 16 C 1.48060 * 113.85439 * 94.23438 * 15 14 13 17 17 C 1.53700 * 112.46703 * 318.31080 * 16 15 14 18 18 H 1.09001 * 108.95430 * 79.14864 * 17 16 15 19 19 O 1.42902 * 108.95313 * 197.87955 * 17 16 15 20 20 C 1.47908 * 111.00595 * 57.42783 * 12 2 1 21 21 H 1.09004 * 109.47166 * 174.04485 * 1 2 3 22 22 H 1.09003 * 109.47256 * 54.04620 * 1 2 3 23 23 H 1.09005 * 109.47255 * 294.04154 * 1 2 3 24 24 H 0.97004 * 119.99515 * 180.02562 * 7 6 4 25 25 H 1.09000 * 108.95613 * 308.76745 * 13 12 2 26 26 H 1.08997 * 108.95781 * 67.51216 * 13 12 2 27 27 H 1.08994 * 109.57446 * 40.98979 * 14 13 12 28 28 H 1.09001 * 109.57331 * 161.24856 * 14 13 12 29 29 H 1.00896 * 111.00024 * 328.11109 * 15 14 13 30 30 H 1.08993 * 108.88587 * 79.08538 * 16 15 14 31 31 H 1.09006 * 108.88095 * 197.64427 * 16 15 14 32 32 H 0.96699 * 114.00246 * 299.99994 * 19 17 16 33 33 H 1.09002 * 109.63471 * 273.49525 * 20 12 2 34 34 H 1.09004 * 109.62522 * 34.08294 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1407 -5.1119 11 1 3.6310 -1.7569 -3.7117 12 7 2.0196 -0.6924 1.1995 13 6 1.7763 0.0660 2.3511 14 6 2.4539 -0.5386 3.5974 15 7 1.6549 -1.6460 4.0724 16 6 2.0888 -2.9632 3.5538 17 6 2.4602 -2.9143 2.0632 18 1 3.4612 -2.4950 1.9613 19 8 2.4593 -4.2444 1.5407 20 6 1.4954 -2.0739 1.2653 21 1 -0.3634 -1.0221 -0.1066 22 1 -0.3634 0.6034 -0.8319 23 1 -0.3634 0.4187 0.9385 24 1 0.7089 1.1610 -3.4845 25 1 2.1558 1.0760 2.1966 26 1 0.7010 0.1144 2.5226 27 1 3.4505 -0.8934 3.3352 28 1 2.5295 0.2202 4.3762 29 1 0.6751 -1.4900 3.8888 30 1 2.9561 -3.2981 4.1227 31 1 1.2793 -3.6803 3.6908 32 1 3.0857 -4.8385 1.9763 33 1 0.5205 -2.0729 1.7530 34 1 1.4035 -2.4790 0.2575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307270909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:55 Heat of formation + Delta-G solvation = -60.611428 kcal Electronic energy + Delta-G solvation = -15516.933387 eV Core-core repulsion = 13062.847579 eV Total energy + Delta-G solvation = -2454.085807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84721 -37.86925 -36.46379 -34.49934 -31.82929 -30.97481 -27.41261 -27.04772 -26.43235 -23.27615 -21.77030 -20.87667 -18.41596 -18.08123 -17.31122 -16.90039 -16.40419 -16.22089 -15.50383 -14.84494 -14.69245 -14.46733 -13.82430 -13.60300 -13.44696 -13.06038 -12.92635 -12.70401 -12.60114 -12.36778 -12.14370 -12.08313 -11.94780 -11.50494 -10.97968 -10.91984 -10.54078 -9.29963 -8.90147 -8.14655 -6.24517 1.39249 1.40049 1.50880 2.40141 2.96287 3.14525 3.28416 3.74996 3.87514 4.04256 4.11907 4.27382 4.44798 4.50975 4.63443 4.70847 4.81339 4.83236 4.93110 5.04003 5.07701 5.13079 5.22439 5.48211 5.66841 5.74612 6.05874 6.20852 6.35811 6.40207 6.86671 6.90175 6.94860 7.44222 8.91606 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.010066 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.996003 B = 2781.046139 C = 3289.598995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.221 3.779 3 H 0.011 0.989 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.272 1.272 12 N -0.550 5.550 13 C 0.035 3.965 14 C 0.074 3.926 15 N -0.686 5.686 16 C 0.041 3.959 17 C 0.085 3.915 18 H 0.052 0.948 19 O -0.582 6.582 20 C 0.080 3.920 21 H 0.024 0.976 22 H 0.060 0.940 23 H 0.027 0.973 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.341 0.659 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.393 0.607 33 H 0.028 0.972 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -5.780 11.342 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.115 3.885 3 H 0.029 0.971 4 C -0.553 4.553 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.274 5.274 13 C -0.096 4.096 14 C -0.057 4.057 15 N -0.317 5.317 16 C -0.089 4.089 17 C 0.024 3.976 18 H 0.070 0.930 19 O -0.389 6.389 20 C -0.047 4.047 21 H 0.043 0.957 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.032 0.968 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.160 0.840 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.243 0.757 33 H 0.047 0.953 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.451 -5.527 11.359 12.868 hybrid contribution -0.641 -0.135 -1.697 1.819 sum 1.810 -5.663 9.662 11.345 Atomic orbital electron populations 1.22153 1.00150 0.99369 0.99345 1.19052 0.89989 0.92770 0.86726 0.97107 1.21327 1.30677 1.12243 0.91045 0.93089 1.25659 0.95424 0.95791 1.01747 1.70010 1.37833 1.23992 1.24061 0.85576 0.78766 0.78283 0.79135 1.20349 1.20618 1.19623 1.59194 1.62487 1.02243 1.03486 1.21783 0.97629 0.98048 0.92142 1.21930 0.96947 0.93303 0.93486 1.59757 1.07823 1.01838 1.62294 1.23059 1.02539 0.91578 0.91697 1.22281 0.99071 0.82662 0.93611 0.93023 1.86542 1.66194 1.21868 1.64285 1.21407 0.94455 0.88610 1.00223 0.95718 0.92153 0.95364 0.92908 0.91780 0.96820 0.91098 0.88501 0.83986 0.89234 0.90021 0.75730 0.95346 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.41 8.31 71.98 0.60 -6.81 16 2 C 0.22 11.28 2.27 44.17 0.10 11.39 16 3 H 0.01 0.62 7.84 -2.39 -0.02 0.60 16 4 C -0.51 -28.87 7.58 25.60 0.19 -28.67 16 5 H 0.05 2.93 7.18 -2.91 -0.02 2.91 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.23 11.39 21.45 0.24 -52.99 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.55 -23.15 4.01 -891.52 -3.58 -26.73 16 13 C 0.04 1.23 4.66 87.95 0.41 1.64 16 14 C 0.07 1.99 6.31 87.15 0.55 2.54 16 15 N -0.69 -17.35 6.53 -512.98 -3.35 -20.70 16 16 C 0.04 0.99 6.10 86.32 0.53 1.52 16 17 C 0.08 2.67 2.98 30.11 0.09 2.76 16 18 H 0.05 1.75 7.22 -2.39 -0.02 1.74 16 19 O -0.58 -17.62 13.17 -148.98 -1.96 -19.58 16 20 C 0.08 3.20 3.48 85.39 0.30 3.49 16 21 H 0.02 1.19 7.25 -2.39 -0.02 1.17 16 22 H 0.06 3.27 6.25 -2.39 -0.01 3.26 16 23 H 0.03 1.22 6.59 -2.38 -0.02 1.20 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.06 2.29 7.81 -2.39 -0.02 2.27 16 26 H 0.01 0.49 6.11 -2.39 -0.01 0.47 16 27 H 0.07 2.01 6.93 -2.39 -0.02 1.99 16 28 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.34 8.79 7.50 -89.70 -0.67 8.12 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.85 8.13 -2.38 -0.02 1.83 16 32 H 0.39 7.45 9.08 -74.06 -0.67 6.77 16 33 H 0.03 1.09 6.97 -2.39 -0.02 1.07 16 34 H 0.06 2.99 6.17 -2.39 -0.01 2.97 16 Total: -1.00 -62.42 258.59 -3.64 -66.06 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -0.24 Total: 18.15 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 3.21 Total: -10.99 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -6.68 Total: -100.41 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -1.96 Total: -19.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -62.42 -3.64 -66.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307270909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.451 kcal (2) G-P(sol) polarization free energy of solvation -62.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds