Wall clock time and date at job start Thu Apr 9 2020 14:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86794 * 119.99637 * 2 1 4 4 H 1.48509 * 109.47158 * 274.98188 * 3 2 1 5 5 H 1.48496 * 109.47684 * 34.98469 * 3 2 1 6 6 H 1.48503 * 109.46849 * 154.99100 * 3 2 1 7 7 C 1.40161 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99894 * 186.25414 * 7 2 1 9 9 C 1.41509 * 119.99898 * 6.26325 * 7 2 1 10 10 O 1.21822 * 120.00004 * 353.74429 * 9 7 2 11 11 N 1.34780 * 119.99833 * 173.75560 * 9 7 2 12 12 C 1.38567 * 119.99608 * 179.97438 * 11 9 7 13 13 C 1.36671 * 126.30964 * 359.72348 * 12 11 9 14 14 C 1.39553 * 107.83174 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 125.73535 * 179.97438 * 14 13 12 16 16 N 1.31073 * 108.51850 * 359.97438 * 14 13 12 17 17 N 1.36081 * 126.30156 * 179.41058 * 12 11 9 18 18 H 0.96999 * 126.11549 * 359.97438 * 17 12 11 19 19 H 0.96992 * 119.99760 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00038 * 359.71939 * 11 9 7 21 21 H 1.07998 * 126.08446 * 359.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.3823 2.1073 -1.3949 5 1 1.4943 2.6200 0.8027 6 1 3.5865 1.4120 0.5919 7 6 2.0071 -1.2138 0.0005 8 1 3.0822 -1.2165 0.1024 9 6 1.3059 -2.4357 -0.1326 10 8 0.0877 -2.4420 -0.1331 11 7 1.9858 -3.5926 -0.2587 12 6 1.2991 -4.7891 -0.3885 13 6 -0.0585 -4.9460 -0.3997 14 6 -0.3303 -6.3065 -0.5503 15 17 -1.9099 -7.0230 -0.6223 16 7 0.8077 -6.9522 -0.6282 17 7 1.8524 -6.0238 -0.5343 18 1 2.8007 -6.2252 -0.5665 19 1 -0.4849 0.8400 0.0004 20 1 2.9558 -3.5872 -0.2622 21 1 -0.7907 -4.1574 -0.3083 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307705332.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:28 Heat of formation + Delta-G solvation = 31.521370 kcal Electronic energy + Delta-G solvation = -11851.146399 eV Core-core repulsion = 9368.839739 eV Total energy + Delta-G solvation = -2482.306659 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.020 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.63171 -37.71681 -36.26263 -33.67180 -32.60360 -30.44145 -28.74396 -26.51966 -21.86847 -21.28963 -19.54587 -18.19882 -16.86931 -15.66420 -15.03018 -14.67435 -14.22877 -13.76970 -12.92887 -12.67502 -12.56064 -11.63579 -11.56546 -11.21890 -11.18192 -10.80659 -10.45404 -9.97968 -9.81515 -9.06328 -8.54868 -7.87833 -7.23690 -6.53386 -5.06912 2.05863 2.32159 2.97745 3.04809 3.09124 3.28779 3.33939 3.91196 4.30216 4.60673 5.54025 5.58249 6.15025 6.42100 7.00549 7.12193 7.41547 7.58396 7.81459 7.93611 8.17139 8.65145 9.04101 10.20587 10.39116 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.064238 B = 0.007340 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.775977 B = 3813.966008 C = 4236.751858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.087 3.913 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.073 0.927 9 C 0.545 3.455 10 O -0.548 6.548 11 N -0.668 5.668 12 C 0.360 3.640 13 C -0.289 4.289 14 C 0.142 3.858 15 Cl -0.014 7.014 16 N -0.313 5.313 17 N -0.499 5.499 18 H 0.434 0.566 19 H 0.276 0.724 20 H 0.394 0.606 21 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -5.258 -0.706 6.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.354 3.646 10 O -0.429 6.429 11 N -0.316 5.316 12 C 0.136 3.864 13 C -0.323 4.323 14 C -0.049 4.049 15 Cl 0.014 6.986 16 N -0.142 5.142 17 N -0.217 5.217 18 H 0.278 0.722 19 H 0.087 0.913 20 H 0.227 0.773 21 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.760 -6.197 -0.812 6.832 hybrid contribution 1.077 1.286 0.040 1.679 sum 3.838 -4.911 -0.772 6.280 Atomic orbital electron populations 1.69987 1.07334 1.28347 1.31092 1.25769 0.94719 1.00804 0.92399 0.86188 0.80182 0.80506 0.79017 1.19459 1.20077 1.18623 1.19888 0.94970 0.89597 1.52382 0.90834 1.17064 0.87664 0.81157 0.78694 1.90609 1.13368 1.84146 1.54823 1.43987 1.09525 1.03364 1.74675 1.18560 0.91362 0.80986 0.95533 1.21582 0.94368 0.94883 1.21439 1.22403 0.87343 0.92505 1.02620 1.98334 1.19151 1.84145 1.96968 1.77226 0.93461 1.12724 1.30754 1.46209 1.08016 1.02824 1.64676 0.72214 0.91284 0.77286 0.79896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.28 11.75 55.56 0.65 -19.63 14 2 C 0.09 2.21 5.49 -17.34 -0.10 2.11 14 3 Si 0.92 18.25 29.56 -169.99 -5.03 13.23 14 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 14 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.53 -13.55 9.29 -37.61 -0.35 -13.90 14 8 H 0.07 1.67 7.86 -52.49 -0.41 1.26 14 9 C 0.54 14.23 7.52 -15.01 -0.11 14.12 14 10 O -0.55 -16.25 12.01 5.08 0.06 -16.18 14 11 N -0.67 -13.98 5.38 -13.99 -0.08 -14.05 14 12 C 0.36 7.44 8.10 -153.10 -1.24 6.20 14 13 C -0.29 -6.50 9.64 -39.66 -0.38 -6.88 14 14 C 0.14 2.84 7.82 -17.39 -0.14 2.70 14 15 Cl -0.01 -0.23 29.32 -51.86 -1.52 -1.75 14 16 N -0.31 -6.00 12.69 32.89 0.42 -5.58 14 17 N -0.50 -8.60 7.42 31.22 0.23 -8.37 14 18 H 0.43 5.59 8.96 -182.62 -1.64 3.96 14 19 H 0.28 6.80 8.29 -40.82 -0.34 6.46 14 20 H 0.39 6.64 8.78 -40.82 -0.36 6.28 14 21 H 0.18 4.65 5.82 -52.49 -0.31 4.35 14 LS Contribution 217.00 15.07 3.27 3.27 Total: -1.00 -30.78 217.00 -6.15 -36.93 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -1.85 Total: 7.78 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.32 Total: 4.35 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 1.23 Total: -47.63 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.06 Total: -16.18 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.75 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.78 -6.15 -36.93 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705332.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.454 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds