Wall clock time and date at job start Thu Apr 9 2020 14:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 111.00064 * 2 1 4 4 C 1.50703 * 109.46915 * 293.95442 * 3 2 1 5 5 H 1.07998 * 120.00064 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00085 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99599 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99971 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47367 * 59.99633 * 8 6 4 10 10 H 1.48501 * 109.46934 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47058 * 299.99508 * 8 6 4 12 12 C 1.39032 * 111.00380 * 123.95352 * 2 1 3 13 13 C 1.38888 * 120.16830 * 296.32603 * 12 2 1 14 14 C 1.38015 * 120.06689 * 180.28227 * 13 12 2 15 15 C 1.38572 * 120.42133 * 359.71253 * 14 13 12 16 16 C 1.37796 * 120.34678 * 0.02562 * 15 14 13 17 17 C 1.39720 * 119.91802 * 359.97438 * 16 15 14 18 18 C 1.43205 * 120.20635 * 180.02562 * 17 16 15 19 19 N 3.54358 * 118.82805 * 209.71500 * 2 1 3 20 20 H 1.09004 * 109.47239 * 296.04801 * 1 2 3 21 21 H 1.09000 * 109.47566 * 56.04587 * 1 2 3 22 22 H 1.09002 * 109.47205 * 176.04919 * 1 2 3 23 23 H 1.08998 * 109.46998 * 53.95033 * 3 2 1 24 24 H 1.08995 * 109.46987 * 173.95545 * 3 2 1 25 25 H 0.97003 * 119.99792 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.96935 * 359.97438 * 13 12 2 27 27 H 1.07996 * 119.79223 * 179.73957 * 14 13 12 28 28 H 1.08008 * 119.82413 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.03771 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 1 1.0746 1.5113 -2.0488 6 6 2.0267 3.3495 -1.5286 7 7 2.7110 4.0022 -0.6146 8 14 1.5816 4.1872 -3.1378 9 1 0.1044 4.2235 -3.2849 10 1 2.1129 5.5740 -3.1373 11 1 2.1735 3.4303 -4.2701 12 6 1.9673 -0.7249 1.0766 13 6 1.7203 -0.3027 2.3765 14 6 2.2209 -1.0207 3.4436 15 6 2.9669 -2.1686 3.2288 16 6 3.2177 -2.6061 1.9465 17 6 2.7179 -1.8902 0.8557 18 6 2.9744 -2.3396 -0.4796 19 7 3.1776 -2.6962 -1.5388 20 1 -0.3634 0.4513 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0708 23 1 1.5610 1.9274 0.8309 24 1 3.0796 1.3444 0.1082 25 1 2.9856 4.9184 -0.7766 26 1 1.1402 0.5910 2.5525 27 1 2.0298 -0.6861 4.4525 28 1 3.3536 -2.7233 4.0710 29 1 3.7994 -3.5016 1.7848 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020075528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:49 Heat of formation + Delta-G solvation = 62.012024 kcal Electronic energy + Delta-G solvation = -13649.224213 eV Core-core repulsion = 11344.620104 eV Total energy + Delta-G solvation = -2304.604109 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.64421 -36.22940 -35.79620 -32.65439 -31.07930 -29.65546 -27.29630 -25.21200 -23.37444 -22.69653 -20.34667 -18.49495 -16.54107 -15.98749 -15.29734 -14.86850 -14.47872 -13.95194 -13.80279 -13.14526 -13.11982 -12.67689 -12.24217 -12.09557 -11.90261 -11.67008 -11.37687 -11.09314 -11.00227 -10.70501 -10.60648 -10.06417 -9.38714 -8.75703 -8.51274 -8.39176 -7.61372 -6.09600 -4.11655 1.06460 1.49681 3.24716 3.31219 3.35032 3.35206 3.39076 4.18637 4.34656 4.38185 4.62632 5.05656 5.16948 5.26462 5.40491 5.62205 5.74246 5.98563 6.06267 6.10229 6.37527 6.52763 6.58466 6.66462 6.89109 7.14536 7.20668 7.72851 7.89253 8.02011 8.07029 8.45232 8.94179 9.52744 11.01120 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.008325 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.887760 B = 3362.596140 C = 3738.695192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.522 5.522 3 C 0.201 3.799 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.167 3.833 13 C -0.153 4.153 14 C -0.084 4.084 15 C -0.140 4.140 16 C -0.070 4.070 17 C -0.024 4.024 18 C 0.277 3.723 19 N -0.430 5.430 20 H 0.022 0.978 21 H 0.083 0.917 22 H 0.048 0.952 23 H 0.001 0.999 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -9.363 9.455 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.244 5.244 3 C 0.078 3.922 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.069 3.931 13 C -0.173 4.173 14 C -0.104 4.104 15 C -0.158 4.158 16 C -0.091 4.091 17 C -0.029 4.029 18 C -0.038 4.038 19 N -0.105 5.105 20 H 0.041 0.959 21 H 0.102 0.898 22 H 0.067 0.933 23 H 0.019 0.981 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.353 -9.930 7.375 12.443 hybrid contribution -0.476 1.261 0.308 1.383 sum -1.829 -8.670 7.683 11.728 Atomic orbital electron populations 1.22264 0.86266 1.00293 1.01500 1.59694 1.08179 1.18841 1.37701 1.19839 0.95586 0.79446 0.97341 1.21068 1.35482 0.96959 1.01596 0.91749 1.24961 0.95079 0.97231 0.97074 1.69941 1.37972 1.11591 1.34078 0.86526 0.78753 0.78309 0.83668 1.20164 1.21256 1.20097 1.19133 0.92508 0.91284 0.90206 1.21828 1.01859 1.00907 0.92740 1.21217 0.95851 0.94405 0.98882 1.20941 1.00832 0.97679 0.96355 1.21029 0.97939 0.98809 0.91367 1.16122 1.03688 0.96864 0.86204 1.25297 0.93259 0.92686 0.92556 1.81107 1.08969 1.09910 1.10530 0.95925 0.89809 0.93267 0.98075 0.94958 0.92715 0.85179 0.85822 0.85497 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.19 60.06 0.55 1.36 15 2 N -0.52 -11.19 4.09 -180.07 -0.74 -11.92 15 3 C 0.20 5.10 4.30 -4.97 -0.02 5.08 15 4 C -0.51 -14.27 8.46 -34.44 -0.29 -14.56 15 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 15 6 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 7 N -0.90 -26.25 13.29 55.43 0.74 -25.51 15 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 15 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 12 C 0.17 3.02 4.67 -83.56 -0.39 2.63 15 13 C -0.15 -2.36 8.64 -39.42 -0.34 -2.71 15 14 C -0.08 -1.01 10.03 -39.54 -0.40 -1.41 15 15 C -0.14 -1.53 10.02 -39.62 -0.40 -1.92 15 16 C -0.07 -0.88 9.75 -39.19 -0.38 -1.26 15 17 C -0.02 -0.40 5.76 -106.62 -0.61 -1.02 15 18 C 0.28 5.22 14.81 -22.47 -0.33 4.89 15 19 N -0.43 -8.86 18.54 41.83 0.78 -8.08 15 20 H 0.02 0.39 7.32 -51.93 -0.38 0.01 15 21 H 0.08 1.68 6.76 -51.93 -0.35 1.33 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.00 0.04 7.48 -51.93 -0.39 -0.35 15 24 H 0.03 0.90 8.06 -51.93 -0.42 0.48 15 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 26 H 0.13 2.04 7.12 -52.49 -0.37 1.66 15 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.13 0.98 8.06 -52.48 -0.42 0.56 15 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 LS Contribution 262.34 15.07 3.95 3.95 Total: -1.00 -30.88 262.34 -6.11 -36.99 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -3.11 Total: -4.70 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.71 Total: -7.37 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.78 Total: -45.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.88 -6.11 -36.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020075528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.004 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds