Wall clock time and date at job start Thu Apr 9 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32038 * 125.94673 * 2 1 4 4 C 1.33402 * 110.02173 * 179.73509 * 3 2 1 5 5 C 1.40358 * 131.73452 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.28137 * 0.06673 * 5 4 3 7 7 C 1.36580 * 119.43792 * 180.02562 * 5 4 3 8 8 C 1.40147 * 119.69792 * 0.02562 * 7 5 4 9 9 C 1.35346 * 120.12851 * 359.97438 * 8 7 5 10 10 N 1.36238 * 120.57836 * 0.02562 * 9 8 7 11 11 C 1.38472 * 132.45097 * 179.97438 * 10 9 8 12 12 C 1.39818 * 126.89510 * 0.07440 * 11 10 9 13 13 H 1.08007 * 120.00075 * 146.74516 * 12 11 10 14 14 C 1.39874 * 120.00094 * 326.75516 * 12 11 10 15 15 N 1.31028 * 119.99970 * 339.67897 * 14 12 11 16 16 Si 1.86806 * 120.00314 * 159.68321 * 14 12 11 17 17 H 1.48498 * 109.46837 * 59.99724 * 16 14 12 18 18 H 1.48493 * 109.47253 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46966 * 299.99754 * 16 14 12 20 20 H 1.08997 * 109.47292 * 95.18335 * 1 2 3 21 21 H 1.08994 * 109.47347 * 215.18986 * 1 2 3 22 22 H 1.09007 * 109.46733 * 335.18586 * 1 2 3 23 23 H 1.09003 * 109.47312 * 89.99788 * 6 5 4 24 24 H 1.09003 * 109.47164 * 209.99929 * 6 5 4 25 25 H 1.08996 * 109.46834 * 329.99829 * 6 5 4 26 26 H 1.08002 * 120.14907 * 180.02562 * 7 5 4 27 27 H 1.08003 * 119.93427 * 180.02562 * 8 7 5 28 28 H 1.08004 * 119.71030 * 180.02562 * 9 8 7 29 29 H 0.97000 * 120.00113 * 177.13204 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0689 0.0000 4 6 3.5649 0.7029 0.0058 5 6 4.7508 1.4538 0.0077 6 6 4.6966 2.9597 0.0043 7 6 5.9542 0.8079 0.0136 8 6 5.9903 -0.5931 0.0170 9 6 4.8376 -1.3024 0.0151 10 7 3.6326 -0.6667 0.0093 11 6 2.3292 -1.1342 0.0057 12 6 1.9166 -2.4701 0.0088 13 1 1.0079 -2.7534 0.5191 14 6 2.6809 -3.4397 -0.6487 15 7 3.5320 -3.0831 -1.5789 16 14 2.4880 -5.2430 -0.2008 17 1 1.0855 -5.6660 -0.4439 18 1 3.4032 -6.0611 -1.0364 19 1 2.8216 -5.4352 1.2334 20 1 -0.3634 -0.0928 -1.0234 21 1 -0.3634 -0.8398 0.5922 22 1 -0.3633 0.9329 0.4313 23 1 4.6804 3.3251 1.0312 24 1 5.5745 3.3537 -0.5077 25 1 3.7957 3.2897 -0.5130 26 1 6.8738 1.3743 0.0155 27 1 6.9398 -1.1077 0.0221 28 1 4.8733 -2.3818 0.0182 29 1 4.0918 -3.7504 -2.0056 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031916238.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:56 Heat of formation + Delta-G solvation = 44.535177 kcal Electronic energy + Delta-G solvation = -14232.288994 eV Core-core repulsion = 11926.927032 eV Total energy + Delta-G solvation = -2305.361962 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.79386 -37.97593 -35.99330 -34.43196 -32.30768 -31.16691 -28.92468 -27.45105 -26.36763 -23.14828 -22.50920 -20.86478 -19.33138 -17.56245 -17.08868 -16.84527 -16.20358 -15.91927 -14.90127 -14.81235 -14.16325 -13.70738 -13.61531 -13.49784 -13.40507 -13.06679 -12.94550 -12.69043 -12.33885 -12.30244 -11.97142 -11.94511 -11.22198 -10.82991 -10.54249 -9.15335 -8.85369 -8.29742 -6.25054 0.26912 0.82214 1.38070 1.42421 1.50160 2.18474 2.21852 2.46207 3.00042 3.07287 3.79307 4.05594 4.24130 4.36347 4.52151 4.67716 4.83824 4.87208 4.89992 4.99235 5.07670 5.16594 5.25347 5.29984 5.45332 5.52355 5.71891 5.83250 6.12770 6.36996 6.58819 6.77466 7.04019 7.56847 8.29138 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.012404 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.877954 B = 2256.854691 C = 3019.072829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.101 4.101 3 N -0.503 5.503 4 C 0.105 3.895 5 C -0.068 4.068 6 C -0.086 4.086 7 C -0.137 4.137 8 C -0.179 4.179 9 C 0.079 3.921 10 N -0.383 5.383 11 C 0.139 3.861 12 C -0.483 4.483 13 H 0.098 0.902 14 C 0.033 3.967 15 N -0.843 5.843 16 Si 0.984 3.016 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.262 1.262 20 H 0.053 0.947 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.165 0.835 27 H 0.165 0.835 28 H 0.140 0.860 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 0.977 2.411 5.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.234 4.234 3 N -0.223 5.223 4 C -0.132 4.132 5 C -0.070 4.070 6 C -0.143 4.143 7 C -0.160 4.160 8 C -0.201 4.201 9 C -0.043 4.043 10 N -0.060 5.060 11 C 0.026 3.974 12 C -0.518 4.518 13 H 0.116 0.884 14 C -0.180 4.180 15 N -0.472 5.472 16 Si 0.805 3.195 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.186 1.186 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.182 0.818 27 H 0.183 0.817 28 H 0.157 0.843 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.494 1.717 2.210 5.294 hybrid contribution 0.095 -1.777 -0.176 1.788 sum 4.589 -0.060 2.034 5.020 Atomic orbital electron populations 1.19650 0.86454 1.01494 1.01008 1.21714 0.97041 0.87838 1.16778 1.69614 0.99319 1.31466 1.21946 1.20726 0.94244 0.81777 1.16474 1.19271 0.88874 0.97223 1.01631 1.20514 1.02857 0.88271 1.02639 1.20988 0.97203 0.93851 1.03927 1.20941 0.96966 0.94961 1.07207 1.21803 0.83635 0.98853 0.99994 1.42804 1.06087 1.07823 1.49300 1.19047 0.80286 0.95552 1.02479 1.18602 1.10846 0.89840 1.32471 0.88449 1.26679 0.93669 1.05848 0.91805 1.70012 1.20427 1.38966 1.17815 0.85202 0.79675 0.75446 0.79199 1.18195 1.19426 1.18611 0.92788 0.91432 0.91790 0.90574 0.88825 0.93050 0.81766 0.81740 0.84268 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 10.21 71.24 0.73 -0.50 15 2 C -0.10 -5.43 7.20 42.98 0.31 -5.12 15 3 N -0.50 -27.32 11.18 -179.54 -2.01 -29.33 15 4 C 0.11 5.49 7.48 133.69 1.00 6.49 15 5 C -0.07 -2.82 5.90 -19.74 -0.12 -2.93 15 6 C -0.09 -2.79 10.01 71.23 0.71 -2.08 15 7 C -0.14 -4.87 9.73 22.35 0.22 -4.65 15 8 C -0.18 -6.80 10.00 22.07 0.22 -6.57 15 9 C 0.08 3.75 9.28 83.34 0.77 4.53 15 10 N -0.38 -20.65 2.91 -343.83 -1.00 -21.65 15 11 C 0.14 7.80 6.26 38.93 0.24 8.04 15 12 C -0.48 -25.76 8.95 23.05 0.21 -25.55 15 13 H 0.10 4.93 7.76 -2.91 -0.02 4.91 15 14 C 0.03 1.62 4.50 85.21 0.38 2.00 15 15 N -0.84 -43.34 10.60 21.83 0.23 -43.10 15 16 Si 0.98 37.20 29.61 68.60 2.03 39.23 15 17 H -0.26 -9.46 7.11 99.48 0.71 -8.76 15 18 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 20 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.07 2.72 7.91 -2.39 -0.02 2.70 15 22 H 0.06 2.51 8.14 -2.38 -0.02 2.49 15 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.09 2.33 8.09 -2.39 -0.02 2.31 15 25 H 0.05 1.84 8.07 -2.39 -0.02 1.82 15 26 H 0.16 4.22 8.06 -2.91 -0.02 4.20 15 27 H 0.17 4.78 8.06 -2.91 -0.02 4.76 15 28 H 0.14 6.64 6.01 -2.91 -0.02 6.62 15 29 H 0.29 13.48 8.30 -92.71 -0.77 12.71 15 Total: -1.00 -66.03 251.82 5.08 -60.95 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.15 Total: 20.25 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 4.68 Total: -26.34 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -2.77 Total: -94.08 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -66.03 5.08 -60.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031916238.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.485 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds