Wall clock time and date at job start Thu Apr 9 2020 14:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47284 * 275.14607 * 3 2 1 5 5 H 1.48501 * 109.46891 * 35.14389 * 3 2 1 6 6 H 1.48496 * 109.47212 * 155.13845 * 3 2 1 7 7 C 1.37875 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00348 * 10.28749 * 7 2 1 9 9 C 1.50695 * 120.00041 * 190.28951 * 7 2 1 10 10 C 1.50700 * 109.47623 * 184.92191 * 9 7 2 11 11 C 1.34850 * 125.89019 * 275.71012 * 10 9 7 12 12 C 1.40894 * 107.41593 * 179.97438 * 11 10 9 13 13 C 1.34848 * 107.41701 * 359.73601 * 12 11 10 14 14 N 1.36337 * 108.21736 * 0.42412 * 13 12 11 15 15 H 0.97008 * 125.63415 * 179.82773 * 14 13 12 16 16 C 1.50708 * 109.47132 * 64.92043 * 9 7 2 17 17 C 1.34845 * 125.88836 * 34.69711 * 16 9 7 18 18 C 1.40895 * 107.41630 * 179.97438 * 17 16 9 19 19 C 1.34851 * 107.41684 * 359.97438 * 18 17 16 20 20 N 1.36340 * 125.88720 * 214.38284 * 16 9 7 21 21 H 0.96997 * 125.64207 * 0.03784 * 20 16 9 22 22 H 0.97008 * 120.00136 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47462 * 304.92280 * 9 7 2 24 24 H 1.08000 * 126.29070 * 359.96629 * 11 10 9 25 25 H 1.08004 * 126.28651 * 180.02562 * 12 11 10 26 26 H 1.08001 * 125.89101 * 180.28855 * 13 12 11 27 27 H 1.08004 * 126.29525 * 359.95981 * 17 16 9 28 28 H 1.08001 * 126.29164 * 179.97438 * 18 17 16 29 29 H 1.08000 * 125.89233 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3880 2.1092 -1.3944 5 1 1.5052 2.6188 0.8059 6 1 3.5968 1.4112 0.5886 7 6 2.0044 -1.1941 -0.0005 8 1 1.4775 -2.1218 -0.1680 9 6 3.4932 -1.2047 0.2326 10 6 4.0183 -2.6071 0.0633 11 6 4.0263 -3.5678 1.0096 12 6 4.6006 -4.7196 0.4363 13 6 4.9162 -4.4207 -0.8402 14 7 4.5666 -3.1237 -1.0731 15 1 4.6846 -2.6481 -1.9104 16 6 3.7863 -0.7240 1.6305 17 6 3.0237 -0.9483 2.7197 18 6 3.6583 -0.3278 3.8140 19 6 4.7848 0.2517 3.3517 20 7 4.8712 0.0077 2.0130 21 1 5.5854 0.3072 1.4290 22 1 -0.4851 0.8401 0.0004 23 1 3.9785 -0.5458 -0.4874 24 1 3.6599 -3.4719 2.0210 25 1 4.7549 -5.6691 0.9275 26 1 5.3700 -5.0921 -1.5541 27 1 2.0966 -1.5018 2.7482 28 1 3.3070 -0.3180 4.8352 29 1 5.4977 0.8093 3.9410 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036437060.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:59 Heat of formation + Delta-G solvation = 94.990660 kcal Electronic energy + Delta-G solvation = -14196.061366 eV Core-core repulsion = 11892.887318 eV Total energy + Delta-G solvation = -2303.174048 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60913 -39.84832 -33.70668 -31.25607 -30.23061 -29.95762 -27.28552 -25.97173 -22.61200 -19.97080 -19.88061 -19.29261 -19.12717 -17.30920 -16.68635 -15.83791 -14.36638 -13.52001 -13.27151 -13.13450 -12.83572 -12.73418 -12.67119 -12.15526 -11.56880 -11.47104 -11.25825 -10.96057 -10.56007 -10.39022 -9.99325 -9.49596 -8.57475 -8.11499 -7.90695 -7.17541 -7.00150 -6.14142 -4.14341 3.04875 3.15350 3.26124 3.36274 3.38192 3.83674 3.90867 4.10466 4.28216 4.40492 5.19702 5.71239 5.81185 6.02057 6.20310 6.23612 6.28330 6.38849 6.53514 6.76003 7.00212 7.13286 7.21201 7.36217 7.51773 7.81968 7.94172 8.01077 8.16823 8.29598 8.42813 8.53639 8.94840 9.47945 10.97265 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.014303 C = 0.010827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.229237 B = 1957.157156 C = 2585.610637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.088 3.912 3 Si 0.867 3.133 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.251 1.251 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.144 3.856 10 C 0.075 3.925 11 C -0.203 4.203 12 C -0.203 4.203 13 C -0.046 4.046 14 N -0.561 5.561 15 H 0.407 0.593 16 C 0.062 3.938 17 C -0.178 4.178 18 C -0.207 4.207 19 C -0.048 4.048 20 N -0.565 5.565 21 H 0.400 0.600 22 H 0.265 0.735 23 H 0.027 0.973 24 H 0.131 0.869 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.134 0.866 28 H 0.122 0.878 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 -1.708 0.916 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.694 3.306 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.123 3.877 10 C -0.038 4.038 11 C -0.226 4.226 12 C -0.229 4.229 13 C -0.175 4.175 14 N -0.156 5.156 15 H 0.242 0.758 16 C -0.051 4.051 17 C -0.201 4.201 18 C -0.233 4.233 19 C -0.178 4.178 20 N -0.160 5.160 21 H 0.235 0.765 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.169 0.831 27 H 0.152 0.848 28 H 0.140 0.860 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.503 -1.498 0.725 10.634 hybrid contribution 0.647 1.307 -0.540 1.555 sum 11.150 -0.191 0.185 11.153 Atomic orbital electron populations 1.69920 1.06371 1.27126 1.48659 1.24889 0.94495 0.98777 0.93440 0.87008 0.81957 0.84197 0.77426 1.21224 1.21318 1.17441 1.20622 0.88298 0.95270 1.50288 0.90157 1.16302 0.97508 0.86322 0.87528 1.20555 1.00214 0.97178 0.85869 1.20609 1.08954 0.93016 1.00048 1.20801 1.08096 0.99191 0.94812 1.21520 1.10796 0.86589 0.98632 1.41941 1.49849 1.11211 1.12577 0.75810 1.21114 0.87948 0.98452 0.97544 1.20594 1.01539 1.06886 0.91130 1.20836 0.97586 1.06048 0.98826 1.21479 1.02398 1.09590 0.84337 1.42149 1.20851 1.44708 1.08303 0.76511 0.92502 0.95469 0.85098 0.85870 0.83121 0.84764 0.86006 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.96 55.43 0.77 -25.57 15 2 C 0.09 2.45 5.37 -17.82 -0.10 2.36 15 3 Si 0.87 20.93 26.61 -169.99 -4.52 16.41 15 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 6 H -0.25 -5.59 4.85 56.52 0.27 -5.32 15 7 C -0.51 -13.69 8.30 -34.44 -0.29 -13.98 15 8 H 0.08 2.42 7.99 -52.49 -0.42 2.00 15 9 C 0.14 3.28 2.25 -94.07 -0.21 3.07 15 10 C 0.08 1.59 6.02 -81.79 -0.49 1.09 15 11 C -0.20 -4.25 10.03 -39.78 -0.40 -4.65 15 12 C -0.20 -3.69 10.86 -39.78 -0.43 -4.12 15 13 C -0.05 -0.75 11.94 -16.75 -0.20 -0.95 15 14 N -0.56 -9.95 6.07 -9.12 -0.06 -10.00 15 15 H 0.41 6.07 8.96 -40.82 -0.37 5.70 15 16 C 0.06 1.36 3.11 -81.79 -0.25 1.11 15 17 C -0.18 -4.01 9.19 -39.78 -0.37 -4.38 15 18 C -0.21 -4.06 10.86 -39.78 -0.43 -4.49 15 19 C -0.05 -0.86 11.94 -16.74 -0.20 -1.06 15 20 N -0.57 -10.63 5.16 -9.12 -0.05 -10.67 15 21 H 0.40 6.40 8.96 -40.82 -0.37 6.04 15 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 23 H 0.03 0.60 6.94 -51.93 -0.36 0.24 15 24 H 0.13 2.82 7.24 -52.49 -0.38 2.44 15 25 H 0.12 1.93 8.06 -52.48 -0.42 1.51 15 26 H 0.15 1.90 8.06 -52.49 -0.42 1.47 15 27 H 0.13 3.25 7.93 -52.48 -0.42 2.83 15 28 H 0.12 2.10 8.06 -52.49 -0.42 1.68 15 29 H 0.15 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 249.30 15.07 3.76 3.76 Total: -1.00 -31.24 249.30 -6.72 -37.96 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -3.26 Total: 14.13 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -3.37 Total: -26.01 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.67 Total: -46.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.52 Total: 16.41 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.24 -6.72 -37.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036437060.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.955 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds