Wall clock time and date at job start Thu Apr 9 2020 14:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47688 * 2 1 4 4 C 1.50701 * 109.47589 * 120.00679 * 2 1 3 5 5 H 1.07992 * 120.00543 * 119.99450 * 4 2 1 6 6 C 1.37879 * 119.99526 * 299.99753 * 4 2 1 7 7 N 1.31511 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47038 * 89.99871 * 8 6 4 10 10 H 1.48492 * 109.47069 * 209.99974 * 8 6 4 11 11 H 1.48504 * 109.46714 * 329.99990 * 8 6 4 12 12 N 1.46504 * 109.47047 * 240.00359 * 2 1 3 13 13 C 1.39704 * 120.00031 * 84.99516 * 12 2 1 14 14 C 1.39039 * 120.00291 * 0.02562 * 13 12 2 15 15 C 1.38205 * 120.23225 * 179.97438 * 14 13 12 16 16 C 1.38015 * 120.23433 * 359.97438 * 15 14 13 17 17 C 1.39633 * 119.99950 * 0.02562 * 16 15 14 18 18 C 1.43200 * 120.11847 * 180.02562 * 17 16 15 19 19 N 7.23343 * 106.64619 * 260.50975 * 2 1 3 20 20 C 1.38630 * 120.00306 * 179.97438 * 13 12 2 21 21 H 1.08998 * 109.47753 * 59.99442 * 1 2 3 22 22 H 1.09004 * 109.47384 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46994 * 299.99456 * 1 2 3 24 24 H 0.97004 * 119.99920 * 179.97438 * 7 6 4 25 25 H 0.97003 * 120.00409 * 265.00406 * 12 2 1 26 26 H 1.08004 * 119.87731 * 0.25038 * 14 13 12 27 27 H 1.08003 * 119.88126 * 180.02562 * 15 14 13 28 28 H 1.07996 * 119.99586 * 179.97438 * 16 15 14 29 29 H 1.07999 * 120.10928 * 0.05490 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3227 -1.1198 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3447 -0.9493 5.1122 11 1 2.4882 -2.5656 3.7119 12 7 2.0182 -0.6906 -1.1962 13 6 2.1516 0.0064 -2.3996 14 6 1.8213 1.3556 -2.4620 15 6 1.9519 2.0498 -3.6498 16 6 2.4115 1.4089 -4.7824 17 6 2.7460 0.0542 -4.7309 18 6 3.2236 -0.6132 -5.9043 19 7 3.6020 -1.1427 -6.8354 20 6 2.6141 -0.6468 -3.5315 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.7091 1.1612 3.4845 25 1 2.2489 -1.6318 -1.1528 26 1 1.4658 1.8638 -1.5778 27 1 1.6941 3.0978 -3.6917 28 1 2.5116 1.9550 -5.7088 29 1 2.8711 -1.6948 -3.4852 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871243.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:04 Heat of formation + Delta-G solvation = 47.974012 kcal Electronic energy + Delta-G solvation = -13328.872363 eV Core-core repulsion = 11023.659520 eV Total energy + Delta-G solvation = -2305.212843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20998 -36.60957 -35.42274 -32.88252 -30.94707 -30.02722 -27.38838 -25.32614 -23.62303 -21.93914 -20.63621 -18.14341 -17.01953 -15.86850 -15.34490 -15.07183 -14.54163 -13.86851 -13.57408 -13.43612 -12.97764 -12.70653 -12.46664 -12.42965 -11.75718 -11.44146 -11.15002 -11.08054 -10.90684 -10.73976 -10.34678 -10.23435 -9.53547 -9.13400 -8.63480 -8.57271 -6.75298 -6.24050 -4.32309 1.15254 1.92886 2.81201 3.18614 3.25985 3.27302 3.28388 4.02063 4.22677 4.30220 4.49143 5.09192 5.20860 5.41842 5.62611 5.80911 6.01818 6.14756 6.57138 6.61449 6.69720 6.81586 6.85893 6.94755 7.08263 7.34303 7.58301 7.63238 7.74481 7.96788 8.21343 8.56678 8.79491 9.35385 10.81888 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.052066 B = 0.006245 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.649691 B = 4482.266841 C = 4807.970384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.266 3.734 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.721 5.721 13 C 0.236 3.764 14 C -0.172 4.172 15 C -0.072 4.072 16 C -0.155 4.155 17 C 0.009 3.991 18 C 0.269 3.731 19 N -0.442 5.442 20 C -0.171 4.171 21 H 0.014 0.986 22 H 0.029 0.971 23 H 0.090 0.910 24 H 0.265 0.735 25 H 0.392 0.608 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 1.585 -7.077 7.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.342 5.342 13 C 0.126 3.874 14 C -0.196 4.196 15 C -0.091 4.091 16 C -0.178 4.178 17 C 0.005 3.995 18 C -0.046 4.046 19 N -0.118 5.118 20 C -0.197 4.197 21 H 0.034 0.966 22 H 0.049 0.951 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.226 0.774 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.797 0.972 -8.129 8.226 hybrid contribution 0.215 -0.621 1.306 1.462 sum 1.013 0.350 -6.823 6.907 Atomic orbital electron populations 1.22198 0.98632 0.99715 1.00721 1.18778 0.90781 0.93500 0.80592 0.93997 1.21196 1.32322 1.13362 0.90227 0.92054 1.24863 0.94692 0.94965 0.99083 1.69862 1.35909 1.22529 1.24052 0.86441 0.78647 0.79932 0.82087 1.20491 1.21029 1.19850 1.45672 1.68909 1.12242 1.07412 1.17843 0.91370 0.91634 0.86570 1.21090 1.06089 0.93249 0.99173 1.20756 0.97212 0.99374 0.91782 1.20662 1.05470 0.92548 0.99141 1.15639 1.03239 0.93164 0.87434 1.25955 0.92928 0.92812 0.92882 1.81182 1.10133 1.09181 1.11278 1.20458 1.08379 0.99866 0.91047 0.96645 0.95146 0.89105 0.92492 0.77449 0.84851 0.85746 0.86316 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.20 37.15 0.34 -3.05 15 2 C 0.27 5.97 2.25 -69.08 -0.16 5.81 15 3 H 0.04 1.02 6.47 -51.93 -0.34 0.68 15 4 C -0.53 -13.30 8.73 -34.44 -0.30 -13.60 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -23.26 11.32 55.43 0.63 -22.64 15 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 15 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 12 N -0.72 -13.62 5.24 -53.32 -0.28 -13.90 15 13 C 0.24 3.98 6.63 -83.83 -0.56 3.43 15 14 C -0.17 -2.77 8.85 -39.30 -0.35 -3.12 15 15 C -0.07 -0.96 10.02 -39.68 -0.40 -1.35 15 16 C -0.15 -1.99 9.75 -39.14 -0.38 -2.37 15 17 C 0.01 0.13 5.73 -106.96 -0.61 -0.48 15 18 C 0.27 3.95 15.33 -22.47 -0.34 3.61 15 19 N -0.44 -7.16 18.54 41.84 0.78 -6.39 15 20 C -0.17 -2.56 9.60 -38.95 -0.37 -2.93 15 21 H 0.01 0.30 7.71 -51.93 -0.40 -0.10 15 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.09 2.21 6.07 -51.93 -0.32 1.90 15 24 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 25 H 0.39 6.94 8.55 -40.82 -0.35 6.59 15 26 H 0.13 2.30 6.10 -52.48 -0.32 1.98 15 27 H 0.12 1.32 8.06 -52.48 -0.42 0.90 15 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 LS Contribution 260.61 15.07 3.93 3.93 Total: -1.00 -25.96 260.61 -6.15 -32.10 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.95 Total: 4.47 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.22 Total: -12.45 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.12 Total: -42.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.96 -6.15 -32.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871243.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.079 kcal (2) G-P(sol) polarization free energy of solvation -25.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds