Wall clock time and date at job start Thu Apr 9 2020 14:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.39705 * 119.99945 * 275.00528 * 12 2 1 14 14 C 1.39038 * 120.00354 * 359.97438 * 13 12 2 15 15 C 1.38200 * 120.23300 * 179.97438 * 14 13 12 16 16 C 1.38016 * 120.23293 * 0.02562 * 15 14 13 17 17 C 1.39632 * 120.00020 * 359.97438 * 16 15 14 18 18 C 1.43200 * 120.11874 * 180.02562 * 17 16 15 19 19 N 7.23326 * 106.63075 * 99.49854 * 2 1 3 20 20 C 1.38629 * 119.99954 * 179.72180 * 13 12 2 21 21 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 23 23 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 24 24 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 25 25 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 26 26 H 1.08000 * 119.88072 * 0.02562 * 14 13 12 27 27 H 1.07999 * 119.88558 * 180.02562 * 15 14 13 28 28 H 1.08003 * 119.99890 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.11119 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1518 0.0063 2.3995 14 6 1.8215 1.3555 2.4620 15 6 1.9511 2.0493 3.6501 16 6 2.4098 1.4081 4.7829 17 6 2.7443 0.0534 4.7312 18 6 3.2200 -0.6146 5.9051 19 7 3.6002 -1.1437 6.8357 20 6 2.6085 -0.6486 3.5328 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7046 1.1585 -3.4844 25 1 2.2492 -1.6317 1.1525 26 1 1.4616 1.8627 1.5791 27 1 1.6925 3.0971 3.6924 28 1 2.5100 1.9541 5.7093 29 1 2.8613 -1.6976 3.4875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871244.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:06 Heat of formation + Delta-G solvation = 48.003620 kcal Electronic energy + Delta-G solvation = -13329.032533 eV Core-core repulsion = 11023.820974 eV Total energy + Delta-G solvation = -2305.211559 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21039 -36.60998 -35.42286 -32.88222 -30.94745 -30.02590 -27.38819 -25.32607 -23.62288 -21.93924 -20.63537 -18.14336 -17.01985 -15.86839 -15.34425 -15.07236 -14.54220 -13.86870 -13.57543 -13.43607 -12.97812 -12.70546 -12.46790 -12.43049 -11.75394 -11.44336 -11.14643 -11.08209 -10.90311 -10.73397 -10.35358 -10.23705 -9.53341 -9.13193 -8.63444 -8.57349 -6.75274 -6.24008 -4.32305 1.15266 1.92889 2.81225 3.18438 3.25973 3.27436 3.28509 4.02090 4.22726 4.30218 4.49160 5.09134 5.20868 5.41824 5.62618 5.80922 6.01830 6.14771 6.57180 6.61498 6.69720 6.81631 6.85894 6.94789 7.08292 7.34333 7.58301 7.63244 7.74694 7.96942 8.21427 8.56663 8.79502 9.35375 10.81862 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.052089 B = 0.006245 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.412802 B = 4482.710025 C = 4808.366618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.266 3.734 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.721 5.721 13 C 0.236 3.764 14 C -0.172 4.172 15 C -0.072 4.072 16 C -0.155 4.155 17 C 0.009 3.991 18 C 0.269 3.731 19 N -0.442 5.442 20 C -0.171 4.171 21 H 0.029 0.971 22 H 0.014 0.986 23 H 0.091 0.909 24 H 0.265 0.735 25 H 0.392 0.608 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 1.592 7.077 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.342 5.342 13 C 0.126 3.874 14 C -0.196 4.196 15 C -0.091 4.091 16 C -0.178 4.178 17 C 0.005 3.995 18 C -0.046 4.046 19 N -0.118 5.118 20 C -0.197 4.197 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.225 0.775 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.808 0.981 8.129 8.228 hybrid contribution 0.201 -0.630 -1.305 1.464 sum 1.009 0.351 6.824 6.907 Atomic orbital electron populations 1.22203 0.98634 0.99721 1.00730 1.18780 0.90777 0.93503 0.80596 0.93996 1.21199 1.32332 1.13341 0.90227 0.92057 1.24866 0.94712 0.94951 0.99088 1.69864 1.35749 1.22688 1.24051 0.86439 0.79245 0.79332 0.82087 1.20517 1.21010 1.19830 1.45668 1.68899 1.12244 1.07417 1.17843 0.91389 0.91623 0.86560 1.21086 1.06066 0.93264 0.99181 1.20754 0.97226 0.99375 0.91767 1.20663 1.05458 0.92566 0.99136 1.15640 1.03252 0.93149 0.87436 1.25954 0.92927 0.92813 0.92882 1.81181 1.10099 1.09190 1.11303 1.20458 1.08431 0.99815 0.91046 0.95155 0.96650 0.89076 0.92496 0.77452 0.84852 0.85746 0.86315 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.20 37.16 0.34 -3.06 15 2 C 0.27 5.97 2.25 -69.08 -0.16 5.81 15 3 H 0.04 1.02 6.48 -51.93 -0.34 0.68 15 4 C -0.53 -13.30 8.73 -34.44 -0.30 -13.60 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.70 5.31 -17.82 -0.09 1.61 15 7 N -0.89 -23.26 11.31 55.43 0.63 -22.63 15 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 15 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 11 H -0.27 -6.01 7.11 56.52 0.40 -5.60 15 12 N -0.72 -13.62 5.24 -53.32 -0.28 -13.90 15 13 C 0.24 3.98 6.63 -83.83 -0.56 3.43 15 14 C -0.17 -2.77 8.84 -39.30 -0.35 -3.11 15 15 C -0.07 -0.96 10.02 -39.68 -0.40 -1.35 15 16 C -0.15 -1.99 9.75 -39.14 -0.38 -2.37 15 17 C 0.01 0.13 5.73 -106.96 -0.61 -0.48 15 18 C 0.27 3.95 15.33 -22.47 -0.34 3.61 15 19 N -0.44 -7.16 18.54 41.84 0.78 -6.39 15 20 C -0.17 -2.56 9.60 -38.95 -0.37 -2.93 15 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.01 0.30 7.70 -51.93 -0.40 -0.10 15 23 H 0.09 2.22 6.06 -51.93 -0.31 1.90 15 24 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 25 H 0.39 6.93 8.55 -40.82 -0.35 6.59 15 26 H 0.13 2.30 6.09 -52.49 -0.32 1.98 15 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 28 H 0.12 1.27 8.06 -52.48 -0.42 0.85 15 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 LS Contribution 260.57 15.07 3.93 3.93 Total: -1.00 -25.97 260.57 -6.15 -32.11 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.95 Total: 4.47 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.22 Total: -12.46 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.12 Total: -42.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.97 -6.15 -32.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871244.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.116 kcal (2) G-P(sol) polarization free energy of solvation -25.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds