Wall clock time and date at job start Thu Apr 9 2020 14:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47193 * 2 1 4 4 C 1.50702 * 109.46710 * 240.00496 * 2 1 3 5 5 H 1.08004 * 119.99655 * 239.99617 * 4 2 1 6 6 C 1.37880 * 120.00089 * 60.00291 * 4 2 1 7 7 N 1.31512 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47226 * 119.99845 * 8 6 4 11 11 H 1.48502 * 109.47049 * 240.00181 * 8 6 4 12 12 N 1.46492 * 109.47120 * 120.00553 * 2 1 3 13 13 C 1.39192 * 120.00215 * 274.99695 * 12 2 1 14 14 C 1.39173 * 119.93014 * 180.02562 * 13 12 2 15 15 C 1.37649 * 120.07909 * 180.02562 * 14 13 12 16 16 C 1.39800 * 119.92194 * 0.25381 * 15 14 13 17 17 C 1.43202 * 120.07684 * 179.72162 * 16 15 14 18 18 N 7.57080 * 98.46587 * 69.17269 * 2 1 3 19 19 C 1.39814 * 119.85265 * 359.42583 * 16 15 14 20 20 C 1.37646 * 119.91845 * 0.59956 * 19 16 15 21 21 H 1.08997 * 109.46928 * 299.99884 * 1 2 3 22 22 H 1.08999 * 109.46910 * 59.99139 * 1 2 3 23 23 H 1.08991 * 109.47217 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99803 * 180.02562 * 7 6 4 25 25 H 0.97004 * 120.00084 * 94.99543 * 12 2 1 26 26 H 1.08008 * 119.95673 * 359.97438 * 14 13 12 27 27 H 1.08002 * 120.03595 * 179.97438 * 15 14 13 28 28 H 1.07997 * 120.04052 * 180.27176 * 19 16 15 29 29 H 1.08006 * 119.96527 * 179.68132 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1482 -2.2854 -3.6040 10 1 1.1677 -1.5862 -4.8166 11 1 3.1472 -0.1854 -4.8161 12 7 2.0183 -0.6907 1.1960 13 6 2.1514 0.0036 2.3951 14 6 2.6159 -0.6540 3.5303 15 6 2.7481 0.0294 4.7179 16 6 2.4101 1.3844 4.7841 17 6 2.5407 2.0971 6.0192 18 7 2.6446 2.6625 6.9990 19 6 1.9501 2.0436 3.6401 20 6 1.8198 1.3539 2.4560 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7081 1.1612 -3.4843 25 1 2.2490 -1.6319 1.1524 26 1 2.8722 -1.7020 3.4797 27 1 3.1083 -0.4816 5.5985 28 1 1.6923 3.0913 3.6868 29 1 1.4596 1.8612 1.5731 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871256.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:10 Heat of formation + Delta-G solvation = 45.215729 kcal Electronic energy + Delta-G solvation = -13303.768851 eV Core-core repulsion = 10998.436400 eV Total energy + Delta-G solvation = -2305.332451 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20657 -36.58437 -35.34630 -32.92690 -30.83012 -30.04547 -27.79235 -25.39561 -22.78204 -22.56759 -20.28072 -18.46411 -17.37360 -16.07016 -15.39922 -14.58812 -14.26494 -13.74577 -13.54668 -13.39955 -13.12308 -12.75046 -12.49250 -12.28308 -11.77172 -11.74646 -11.17050 -11.13212 -10.88590 -10.65405 -10.37953 -10.23808 -9.51297 -9.16602 -8.71949 -8.61797 -6.81015 -6.28003 -4.36823 1.42018 1.77441 3.00724 3.15247 3.24121 3.26454 3.38278 4.10552 4.32274 4.34112 4.42265 5.05418 5.17895 5.21402 5.67185 5.88512 6.00697 6.27232 6.47077 6.59597 6.70154 6.76847 6.81407 6.88946 7.06653 7.29877 7.53913 7.69034 7.85693 7.90411 8.12232 8.47611 8.72749 9.31078 10.77938 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.065070 B = 0.005870 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.202932 B = 4769.276321 C = 4950.240253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.261 3.739 3 H 0.045 0.955 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.708 5.708 13 C 0.268 3.732 14 C -0.224 4.224 15 C -0.015 4.015 16 C -0.137 4.137 17 C 0.277 3.723 18 N -0.466 5.466 19 C -0.015 4.015 20 C -0.208 4.208 21 H 0.016 0.984 22 H 0.092 0.908 23 H 0.030 0.970 24 H 0.265 0.735 25 H 0.394 0.606 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -2.223 6.284 6.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.159 3.841 3 H 0.063 0.937 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.325 5.325 13 C 0.153 3.847 14 C -0.247 4.247 15 C -0.037 4.037 16 C -0.144 4.144 17 C -0.036 4.036 18 N -0.143 5.143 19 C -0.037 4.037 20 C -0.231 4.231 21 H 0.035 0.965 22 H 0.110 0.890 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.228 0.772 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.153 -1.148 7.380 7.558 hybrid contribution 0.305 -1.035 -1.344 1.723 sum 1.458 -2.183 6.037 6.583 Atomic orbital electron populations 1.22196 0.98361 0.99810 1.00924 1.18887 0.91003 0.93684 0.80567 0.93692 1.21210 1.32475 1.13413 0.90152 0.91952 1.24870 0.94662 0.94936 0.99145 1.69870 1.35804 1.22474 1.24053 0.86372 0.78669 0.79583 0.82398 1.19709 1.20802 1.20787 1.45783 1.66470 1.12454 1.07803 1.18299 0.88248 0.91548 0.86593 1.20438 1.11674 1.00356 0.92245 1.20673 0.94204 0.91739 0.97082 1.15640 1.17082 0.93672 0.88026 1.25880 0.92197 0.92806 0.92724 1.81175 1.11969 1.09492 1.11682 1.20798 0.93399 0.98839 0.90650 1.20744 1.09984 0.93431 0.98929 0.96496 0.88977 0.95075 0.92474 0.77232 0.85889 0.86127 0.85950 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.19 37.16 0.34 -3.01 15 2 C 0.26 5.74 2.25 -69.08 -0.16 5.59 15 3 H 0.05 1.08 6.46 -51.92 -0.34 0.74 15 4 C -0.53 -13.09 8.73 -34.44 -0.30 -13.39 15 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 15 7 N -0.88 -23.00 11.32 55.43 0.63 -22.37 15 8 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 15 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 12 N -0.71 -12.91 5.22 -53.28 -0.28 -13.19 15 13 C 0.27 4.39 6.64 -83.82 -0.56 3.83 15 14 C -0.22 -3.09 9.87 -39.45 -0.39 -3.48 15 15 C -0.02 -0.20 9.75 -39.21 -0.38 -0.58 15 16 C -0.14 -1.92 5.74 -106.80 -0.61 -2.54 15 17 C 0.28 4.14 15.33 -22.47 -0.34 3.80 15 18 N -0.47 -7.77 18.54 41.84 0.78 -6.99 15 19 C -0.02 -0.22 9.75 -39.21 -0.38 -0.60 15 20 C -0.21 -3.36 8.80 -39.45 -0.35 -3.71 15 21 H 0.02 0.32 7.68 -51.93 -0.40 -0.08 15 22 H 0.09 2.22 6.07 -51.93 -0.32 1.90 15 23 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 24 H 0.27 6.59 8.31 -40.82 -0.34 6.25 15 25 H 0.39 6.62 8.54 -40.82 -0.35 6.28 15 26 H 0.12 1.46 8.06 -52.48 -0.42 1.03 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 28 H 0.12 1.51 8.06 -52.49 -0.42 1.08 15 29 H 0.14 2.36 6.06 -52.48 -0.32 2.04 15 LS Contribution 260.44 15.07 3.92 3.92 Total: -1.00 -25.89 260.44 -6.14 -32.03 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.95 Total: 4.48 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -3.22 Total: -12.49 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 1.12 Total: -42.55 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.89 -6.14 -32.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871256.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.250 kcal (2) G-P(sol) polarization free energy of solvation -25.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds