Wall clock time and date at job start Thu Apr 9 2020 14:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 123.83955 * 3 2 1 5 5 C 1.50696 * 109.47306 * 179.97438 * 4 3 2 6 6 C 1.38677 * 120.41311 * 90.00293 * 5 4 3 7 7 C 1.38633 * 118.41888 * 180.02562 * 6 5 4 8 8 C 1.38226 * 119.15736 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.61589 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47176 * 124.99496 * 9 8 7 11 11 H 1.07996 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99907 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00194 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99811 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47269 * 59.99961 * 14 12 10 16 16 H 1.48498 * 109.47127 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47269 * 300.00273 * 14 12 10 18 18 N 1.31852 * 120.77025 * 359.97438 * 8 7 6 19 19 C 1.31892 * 121.72165 * 359.70531 * 18 8 7 20 20 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 21 21 H 1.09000 * 109.47090 * 3.84202 * 3 2 1 22 22 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 23 23 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 24 24 H 1.07995 * 120.78923 * 0.02562 * 6 5 4 25 25 H 1.07997 * 120.42042 * 179.97438 * 7 6 5 26 26 H 1.08999 * 109.47339 * 245.00040 * 9 8 7 27 27 H 1.09004 * 109.46942 * 4.99901 * 9 8 7 28 28 H 0.96996 * 120.00101 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.61855 * 180.31406 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8042 -1.1982 5 6 4.6246 0.8054 -1.1979 6 6 5.3275 -0.1874 -1.8636 7 6 6.7130 -0.1465 -1.8360 8 6 7.3431 0.8750 -1.1503 9 6 8.8486 0.9298 -1.1141 10 6 9.3146 2.2728 -1.6144 11 1 8.5927 3.0128 -1.9269 12 6 10.6626 2.5567 -1.6732 13 7 11.5417 1.6555 -1.2931 14 14 11.2401 4.2217 -2.2927 15 1 10.6854 5.2922 -1.4256 16 1 12.7237 4.2757 -2.2571 17 1 10.7703 4.4212 -3.6872 18 7 6.6422 1.8025 -0.5283 19 6 5.3233 1.7986 -0.5386 20 1 2.9711 0.4538 0.9224 21 1 2.9718 -1.0245 -0.0689 22 1 2.7544 0.3510 -2.1205 23 1 2.7537 1.8294 -1.1293 24 1 4.8081 -0.9737 -2.3910 25 1 7.2926 -0.9036 -2.3432 26 1 9.1930 0.7839 -0.0903 27 1 9.2562 0.1438 -1.7500 28 1 12.4899 1.8554 -1.3341 29 1 4.7832 2.5782 -0.0218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038409882.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:11 Heat of formation + Delta-G solvation = 40.268586 kcal Electronic energy + Delta-G solvation = -12963.921573 eV Core-core repulsion = 10658.374597 eV Total energy + Delta-G solvation = -2305.546975 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78251 -37.10672 -34.76428 -33.03397 -31.61473 -30.73754 -27.70358 -24.71949 -23.42670 -22.29272 -20.54559 -17.75208 -16.52479 -16.07048 -15.67177 -14.92088 -14.84365 -14.31754 -14.01203 -13.44064 -13.01456 -12.77471 -12.61571 -12.30322 -12.10636 -11.80885 -11.35211 -11.30830 -11.09813 -10.70655 -10.63184 -9.82709 -9.43412 -9.28738 -8.64512 -8.42567 -8.09415 -6.02855 -4.03596 1.63445 1.81455 2.58695 2.59728 3.35111 3.38637 3.42621 3.78104 4.34136 4.50801 4.76150 4.92742 4.97719 5.08967 5.25958 5.33640 5.34717 5.41267 5.57243 5.81746 5.88216 6.19170 6.33076 6.57435 6.72612 7.28366 7.36275 7.48041 7.52418 7.93678 8.29450 8.81007 8.99447 9.58737 11.08273 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.068431 B = 0.005136 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.074001 B = 5450.847651 C = 5659.195872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.211 3.789 3 C -0.024 4.024 4 C -0.060 4.060 5 C -0.180 4.180 6 C -0.071 4.071 7 C -0.184 4.184 8 C 0.177 3.823 9 C 0.057 3.943 10 C -0.500 4.500 11 H 0.059 0.941 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 N -0.472 5.472 19 C 0.105 3.895 20 H 0.112 0.888 21 H 0.110 0.890 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 -4.108 0.452 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.107 4.107 3 C -0.064 4.064 4 C -0.100 4.100 5 C -0.183 4.183 6 C -0.097 4.097 7 C -0.204 4.204 8 C 0.040 3.960 9 C 0.019 3.981 10 C -0.539 4.539 11 H 0.077 0.923 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.180 5.180 19 C -0.053 4.053 20 H 0.130 0.870 21 H 0.128 0.872 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.142 0.858 25 H 0.148 0.852 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.667 -3.483 0.924 14.134 hybrid contribution 0.397 0.198 -0.819 0.932 sum -13.270 -3.286 0.105 13.671 Atomic orbital electron populations 1.81224 1.13212 1.09079 1.08867 1.29360 0.95390 0.92933 0.92994 1.19401 0.80885 1.04205 1.01950 1.20283 0.91696 1.00925 0.97060 1.20437 0.95082 0.98900 1.03840 1.21341 0.94186 0.97244 0.96956 1.22107 0.94585 1.01076 1.02613 1.22329 0.99294 0.86766 0.87575 1.18359 0.82291 0.98673 0.98733 1.20943 0.91544 0.98774 1.42613 0.92291 1.24991 0.96767 0.97178 0.95607 1.69930 1.01612 1.34160 1.48041 0.86560 0.77304 0.84252 0.79325 1.20136 1.21309 1.20327 1.67729 1.06661 1.25000 1.18588 1.22706 0.90681 0.96241 0.95707 0.87037 0.87217 0.90463 0.90217 0.85775 0.85242 0.93982 0.94590 0.92831 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.65 18.54 42.15 0.78 -4.87 15 2 C 0.21 1.99 15.43 -20.76 -0.32 1.67 15 3 C -0.02 -0.16 5.68 -29.51 -0.17 -0.33 15 4 C -0.06 -0.49 5.33 -27.88 -0.15 -0.64 15 5 C -0.18 -2.20 5.15 -104.48 -0.54 -2.74 15 6 C -0.07 -0.94 9.86 -39.27 -0.39 -1.33 15 7 C -0.18 -3.09 9.71 -39.44 -0.38 -3.48 15 8 C 0.18 3.71 6.13 -82.59 -0.51 3.20 15 9 C 0.06 1.42 5.37 -29.04 -0.16 1.27 15 10 C -0.50 -13.96 8.91 -34.44 -0.31 -14.27 15 11 H 0.06 1.66 7.68 -52.49 -0.40 1.26 15 12 C 0.06 1.56 5.46 -17.82 -0.10 1.47 15 13 N -0.90 -26.21 13.29 55.43 0.74 -25.47 15 14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 18 N -0.47 -9.62 9.96 -9.47 -0.09 -9.71 15 19 C 0.11 1.60 10.86 -17.55 -0.19 1.41 15 20 H 0.11 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.11 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.08 0.58 8.10 -51.93 -0.42 0.16 15 23 H 0.08 0.61 8.09 -51.93 -0.42 0.19 15 24 H 0.12 1.22 8.06 -52.49 -0.42 0.79 15 25 H 0.13 2.00 7.95 -52.49 -0.42 1.58 15 26 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.04 0.91 7.87 -51.93 -0.41 0.50 15 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 29 H 0.14 1.75 8.06 -52.48 -0.42 1.33 15 LS Contribution 269.08 15.07 4.05 4.05 Total: -1.00 -32.06 269.08 -6.06 -38.12 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -3.32 Total: -4.96 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.20 Total: -13.77 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 1.42 Total: -40.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.06 -6.06 -38.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038409882.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.387 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds