Wall clock time and date at job start Thu Apr 9 2020 14:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 123.83955 * 3 2 1 5 5 C 1.50696 * 109.47306 * 179.97438 * 4 3 2 6 6 C 1.38677 * 120.41311 * 90.00293 * 5 4 3 7 7 C 1.38633 * 118.41888 * 180.02562 * 6 5 4 8 8 C 1.38226 * 119.15736 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.61589 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47176 * 124.99496 * 9 8 7 11 11 H 1.07996 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99907 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00194 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99811 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47269 * 59.99961 * 14 12 10 16 16 H 1.48498 * 109.47127 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47269 * 300.00273 * 14 12 10 18 18 N 1.31852 * 120.77025 * 359.97438 * 8 7 6 19 19 C 1.31892 * 121.72165 * 359.70531 * 18 8 7 20 20 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 21 21 H 1.09000 * 109.47090 * 3.84202 * 3 2 1 22 22 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 23 23 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 24 24 H 1.07995 * 120.78923 * 0.02562 * 6 5 4 25 25 H 1.07997 * 120.42042 * 179.97438 * 7 6 5 26 26 H 1.08999 * 109.47339 * 245.00040 * 9 8 7 27 27 H 1.09004 * 109.46942 * 4.99901 * 9 8 7 28 28 H 0.96996 * 120.00101 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.61855 * 180.31406 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8042 -1.1982 5 6 4.6246 0.8054 -1.1979 6 6 5.3275 -0.1874 -1.8636 7 6 6.7130 -0.1465 -1.8360 8 6 7.3431 0.8750 -1.1503 9 6 8.8486 0.9298 -1.1141 10 6 9.3146 2.2728 -1.6144 11 1 8.5927 3.0128 -1.9269 12 6 10.6626 2.5567 -1.6732 13 7 11.5417 1.6555 -1.2931 14 14 11.2401 4.2217 -2.2927 15 1 10.6854 5.2922 -1.4256 16 1 12.7237 4.2757 -2.2571 17 1 10.7703 4.4212 -3.6872 18 7 6.6422 1.8025 -0.5283 19 6 5.3233 1.7986 -0.5386 20 1 2.9711 0.4538 0.9224 21 1 2.9718 -1.0245 -0.0689 22 1 2.7544 0.3510 -2.1205 23 1 2.7537 1.8294 -1.1293 24 1 4.8081 -0.9737 -2.3910 25 1 7.2926 -0.9036 -2.3432 26 1 9.1930 0.7839 -0.0903 27 1 9.2562 0.1438 -1.7500 28 1 12.4899 1.8554 -1.3341 29 1 4.7832 2.5782 -0.0218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038409882.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:11 Heat of formation + Delta-G solvation = 20.313923 kcal Electronic energy + Delta-G solvation = -12964.786872 eV Core-core repulsion = 10658.374597 eV Total energy + Delta-G solvation = -2306.412274 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02552 -37.91660 -35.97388 -34.82224 -32.90016 -32.10892 -29.22416 -26.15103 -24.72975 -23.66396 -21.84318 -18.51720 -18.40493 -17.36670 -17.05286 -16.25355 -15.86314 -15.67040 -15.05737 -14.66830 -14.30487 -13.86893 -13.80628 -13.58283 -13.44455 -13.26866 -12.71835 -12.62853 -12.48814 -12.33926 -11.82308 -11.60941 -11.48117 -10.59278 -10.50903 -9.94347 -9.44475 -8.17349 -6.26081 0.39788 0.64037 1.41023 1.44192 1.52212 1.85700 1.89715 2.43226 3.03562 3.13184 3.20013 3.78984 4.07781 4.12142 4.26787 4.28402 4.37620 4.55502 4.75342 4.90684 5.05260 5.10247 5.26631 5.30459 5.39064 5.52322 5.63157 5.76758 6.06141 6.23454 6.67787 6.83001 7.39097 7.49499 8.93328 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.068431 B = 0.005136 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.074001 B = 5450.847651 C = 5659.195872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.241 3.759 3 C -0.017 4.017 4 C -0.055 4.055 5 C -0.147 4.147 6 C -0.060 4.060 7 C -0.189 4.189 8 C 0.134 3.866 9 C 0.063 3.937 10 C -0.515 4.515 11 H 0.050 0.950 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.964 3.036 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.268 1.268 18 N -0.517 5.517 19 C 0.092 3.908 20 H 0.127 0.873 21 H 0.132 0.868 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.171 0.829 25 H 0.135 0.865 26 H 0.006 0.994 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 -4.036 -0.284 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.075 4.075 3 C -0.057 4.057 4 C -0.095 4.095 5 C -0.149 4.149 6 C -0.085 4.085 7 C -0.209 4.209 8 C -0.002 4.002 9 C 0.026 3.974 10 C -0.553 4.553 11 H 0.068 0.932 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.789 3.211 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.193 1.193 18 N -0.226 5.226 19 C -0.067 4.067 20 H 0.145 0.855 21 H 0.150 0.850 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.188 0.812 25 H 0.153 0.847 26 H 0.024 0.976 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.774 -3.417 0.186 16.141 hybrid contribution 0.930 0.145 -0.564 1.097 sum -14.844 -3.272 -0.379 15.205 Atomic orbital electron populations 1.81273 1.15163 1.11205 1.10855 1.29702 0.95556 0.91054 0.91174 1.19512 0.78846 1.05443 1.01900 1.20317 0.88206 1.02324 0.98623 1.20772 0.97205 0.96532 1.00387 1.21800 0.92418 0.98174 0.96141 1.22150 0.96680 0.99973 1.02083 1.21677 0.97097 0.89783 0.91645 1.18044 0.86401 0.96975 0.95999 1.21242 0.91748 0.99844 1.42507 0.93207 1.25880 0.96937 1.01016 0.95813 1.70050 1.01889 1.36114 1.49080 0.85519 0.77062 0.79541 0.79009 1.19780 1.20443 1.19349 1.67496 1.09440 1.25852 1.19823 1.23227 0.89091 0.97970 0.96364 0.85489 0.84980 0.88606 0.89105 0.81200 0.84731 0.97617 0.96146 0.92660 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.72 18.54 20.01 0.37 -11.35 15 2 C 0.24 3.71 15.43 89.44 1.38 5.09 15 3 C -0.02 -0.14 5.68 28.79 0.16 0.02 15 4 C -0.06 -0.61 5.33 29.85 0.16 -0.45 15 5 C -0.15 -2.98 5.15 -19.77 -0.10 -3.08 15 6 C -0.06 -1.33 9.86 22.47 0.22 -1.11 15 7 C -0.19 -6.19 9.71 22.36 0.22 -5.97 15 8 C 0.13 5.76 6.13 42.55 0.26 6.02 15 9 C 0.06 3.38 5.37 29.10 0.16 3.54 15 10 C -0.51 -29.93 8.91 25.60 0.23 -29.70 15 11 H 0.05 2.91 7.68 -2.91 -0.02 2.88 15 12 C 0.00 0.07 5.46 84.66 0.46 0.53 15 13 N -0.93 -56.17 13.29 21.45 0.28 -55.89 15 14 Si 0.96 45.06 29.54 68.60 2.03 47.09 15 15 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 18 N -0.52 -21.22 9.96 -183.89 -1.83 -23.05 15 19 C 0.09 2.57 10.86 84.67 0.92 3.49 15 20 H 0.13 0.81 8.14 -2.39 -0.02 0.79 15 21 H 0.13 0.66 8.14 -2.39 -0.02 0.64 15 22 H 0.10 0.84 8.10 -2.39 -0.02 0.82 15 23 H 0.09 0.91 8.09 -2.39 -0.02 0.90 15 24 H 0.17 2.28 8.06 -2.91 -0.02 2.26 15 25 H 0.13 4.11 7.95 -2.91 -0.02 4.09 15 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 15 27 H 0.02 1.11 7.87 -2.38 -0.02 1.09 15 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 15 29 H 0.17 3.66 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -74.26 269.08 6.06 -68.20 By element: Atomic # 1 Polarization: -4.49 SS G_CDS: 1.14 Total: -3.35 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.07 Total: -21.64 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.18 Total: -90.29 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.26 6.06 -68.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038409882.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.511 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds