Wall clock time and date at job start Thu Apr 9 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39895 * 120.00233 * 2 1 4 4 C 1.39251 * 119.95194 * 0.02804 * 3 2 1 5 5 C 1.37779 * 120.55443 * 179.97438 * 4 3 2 6 6 C 1.39142 * 120.07034 * 359.75442 * 5 4 3 7 7 N 1.38342 * 132.69706 * 179.63557 * 6 5 4 8 8 H 0.97001 * 124.69875 * 0.65592 * 7 6 5 9 9 C 1.35592 * 110.59962 * 180.38274 * 7 6 5 10 10 C 1.38898 * 109.29746 * 0.22801 * 9 7 6 11 11 C 1.40886 * 126.92023 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00367 * 186.68013 * 11 10 9 13 13 C 1.39737 * 119.99678 * 6.68627 * 11 10 9 14 14 N 1.31055 * 120.00073 * 11.03845 * 13 11 10 15 15 Si 1.86804 * 119.99635 * 191.04625 * 13 11 10 16 16 H 1.48497 * 109.47221 * 94.11616 * 15 13 11 17 17 H 1.48498 * 109.46803 * 214.11611 * 15 13 11 18 18 H 1.48500 * 109.47164 * 334.11604 * 15 13 11 19 19 C 1.40319 * 119.43313 * 0.46197 * 6 5 4 20 20 C 1.38521 * 119.95865 * 179.97438 * 3 2 1 21 21 H 1.09001 * 109.47433 * 60.00039 * 1 2 3 22 22 H 1.09002 * 109.47347 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47300 * 299.99296 * 1 2 3 24 24 H 0.97003 * 119.99830 * 180.02562 * 2 1 3 25 25 H 1.08004 * 119.72896 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.96444 * 179.97438 * 5 4 3 27 27 H 1.07995 * 125.35116 * 180.23518 * 9 7 6 28 28 H 0.97000 * 120.00087 * 179.97438 * 14 13 11 29 29 H 1.08000 * 120.17860 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1645 1.2115 0.0000 4 6 1.4673 2.4169 0.0006 5 6 2.1437 3.6172 0.0011 6 6 3.5350 3.6335 0.0062 7 7 4.4612 4.6611 0.0015 8 1 4.2385 5.6052 0.0023 9 6 5.7234 4.1658 0.0018 10 6 5.6717 2.7778 0.0015 11 6 6.7658 1.8902 0.0021 12 1 6.6001 0.8286 -0.1070 13 6 8.0655 2.3834 0.1440 14 7 8.2581 3.6324 0.4911 15 14 9.5284 1.2625 -0.1612 16 1 9.9837 1.4145 -1.5665 17 1 10.6338 1.6296 0.7598 18 1 9.1304 -0.1476 0.0803 19 6 4.2388 2.4196 0.0010 20 6 3.5497 1.2104 0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.9500 -0.8401 -0.0004 25 1 0.3873 2.4109 0.0015 26 1 1.5933 4.5465 0.0012 27 1 6.6268 4.7574 0.0022 28 1 9.1603 3.9747 0.5900 29 1 4.0919 0.2764 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039295947.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:13 Heat of formation + Delta-G solvation = 52.158613 kcal Electronic energy + Delta-G solvation = -13651.984756 eV Core-core repulsion = 11346.953371 eV Total energy + Delta-G solvation = -2305.031385 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55659 -36.89538 -33.70321 -33.10228 -30.63474 -28.31887 -27.28344 -25.16400 -24.34224 -21.67055 -19.98587 -19.25636 -17.04044 -16.41640 -15.68910 -15.08667 -14.47501 -14.10368 -13.80488 -12.85415 -12.79385 -12.72045 -12.46975 -11.94133 -11.49242 -11.18937 -11.09999 -11.02081 -10.85923 -10.35107 -9.70412 -9.50495 -9.25252 -8.69965 -8.16237 -6.56725 -6.42005 -6.16645 -3.83142 2.27459 2.84737 3.15715 3.23511 3.27780 4.13326 4.17710 4.28737 4.71917 4.93652 5.39969 5.68311 5.71692 5.75420 5.86509 5.96431 6.35907 6.46717 6.60487 6.95519 7.07016 7.13033 7.33620 7.43547 7.67832 7.88839 7.97446 8.20102 8.37113 8.52255 8.80454 9.14001 9.24824 9.34044 10.60095 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.038249 B = 0.008348 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.867271 B = 3353.333949 C = 4056.296581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.768 5.768 3 C 0.142 3.858 4 C -0.175 4.175 5 C -0.115 4.115 6 C 0.052 3.948 7 N -0.601 5.601 8 H 0.392 0.608 9 C -0.077 4.077 10 C 0.007 3.993 11 C -0.420 4.420 12 H 0.069 0.931 13 C 0.057 3.943 14 N -0.836 5.836 15 Si 0.911 3.089 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.084 4.084 20 C -0.134 4.134 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.392 0.608 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.182 0.818 28 H 0.271 0.729 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.867 -2.263 -0.882 9.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.403 5.403 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.138 4.138 6 C -0.057 4.057 7 N -0.204 5.204 8 H 0.224 0.776 9 C -0.201 4.201 10 C 0.001 3.999 11 C -0.454 4.454 12 H 0.087 0.913 13 C -0.153 4.153 14 N -0.467 5.467 15 Si 0.737 3.263 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.091 4.091 20 C -0.157 4.157 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.225 0.775 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.198 0.802 28 H 0.081 0.919 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.792 -1.944 -0.830 9.042 hybrid contribution 0.757 -0.330 -0.093 0.831 sum -8.034 -2.274 -0.923 8.401 Atomic orbital electron populations 1.21271 0.81798 1.00797 1.00102 1.44093 1.04342 1.05231 1.86637 1.17297 0.90633 0.85500 1.02286 1.19949 0.97713 0.90758 1.11359 1.19583 0.90607 0.96785 1.06779 1.18157 0.90168 0.88989 1.08431 1.41397 1.05636 1.05721 1.67656 0.77550 1.22931 0.84846 0.95072 1.17290 1.18026 0.88286 0.91497 1.02056 1.18657 0.89558 0.94044 1.43111 0.91286 1.25594 0.99891 0.95497 0.94283 1.69613 1.22507 1.15220 1.39351 0.86249 0.80620 0.80887 0.78515 1.20084 1.20824 1.19155 1.19231 0.94710 0.90883 1.04281 1.19735 0.90780 0.97000 1.08192 0.94088 0.92105 0.94075 0.77512 0.87585 0.88079 0.80192 0.91864 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 9.94 59.85 0.59 1.87 15 2 N -0.77 -11.99 5.90 -65.35 -0.39 -12.38 15 3 C 0.14 2.78 6.65 -83.70 -0.56 2.23 15 4 C -0.18 -3.31 9.29 -39.37 -0.37 -3.67 15 5 C -0.12 -2.29 10.06 -39.41 -0.40 -2.69 15 6 C 0.05 1.20 7.23 -83.81 -0.61 0.59 15 7 N -0.60 -13.53 6.00 -9.78 -0.06 -13.59 15 8 H 0.39 7.24 8.96 -40.82 -0.37 6.88 15 9 C -0.08 -2.02 10.84 -15.65 -0.17 -2.19 15 10 C 0.01 0.19 6.07 -104.79 -0.64 -0.44 15 11 C -0.42 -11.76 9.40 -38.02 -0.36 -12.11 15 12 H 0.07 1.87 7.87 -52.49 -0.41 1.46 15 13 C 0.06 1.51 5.45 -17.32 -0.09 1.41 15 14 N -0.84 -22.40 10.57 55.54 0.59 -21.81 15 15 Si 0.91 20.05 29.57 -169.99 -5.03 15.02 15 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 15 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 19 C -0.08 -2.12 6.32 -104.90 -0.66 -2.79 15 20 C -0.13 -3.02 9.94 -39.13 -0.39 -3.41 15 21 H 0.04 0.49 7.95 -51.93 -0.41 0.07 15 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.04 0.49 7.94 -51.93 -0.41 0.08 15 24 H 0.39 5.51 8.84 -40.82 -0.36 5.15 15 25 H 0.11 1.70 6.70 -52.48 -0.35 1.35 15 26 H 0.10 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.18 4.81 5.95 -52.49 -0.31 4.49 15 28 H 0.27 6.70 8.30 -40.82 -0.34 6.36 15 29 H 0.11 2.31 8.06 -52.49 -0.42 1.89 15 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -29.95 251.32 -7.77 -37.72 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -3.03 Total: 12.45 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.64 Total: -21.19 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.14 Total: -47.78 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.95 -7.77 -37.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039295947.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.880 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds