Wall clock time and date at job start Thu Apr 9 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99636 * 2 1 4 4 H 1.48505 * 109.47726 * 240.00143 * 3 2 1 5 5 H 1.48505 * 109.47413 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47327 * 120.00415 * 3 2 1 7 7 C 1.37871 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46843 * 179.97438 * 10 9 7 12 12 C 1.38256 * 120.02603 * 90.00736 * 11 10 9 13 13 C 1.38105 * 119.93154 * 180.02562 * 12 11 10 14 14 C 1.38497 * 120.21438 * 359.97035 * 13 12 11 15 15 C 1.38216 * 119.85394 * 0.02955 * 14 13 12 16 16 C 1.38096 * 120.03705 * 269.99939 * 11 10 9 17 17 C 1.51362 * 109.76055 * 180.02562 * 15 14 13 18 18 C 1.54347 * 105.17257 * 342.81694 * 17 15 14 19 19 C 1.51680 * 130.30808 * 179.85164 * 14 13 12 20 20 H 0.96996 * 120.00446 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46888 * 59.99970 * 9 7 2 22 22 H 1.08999 * 109.46950 * 299.99790 * 9 7 2 23 23 H 1.08997 * 109.46502 * 60.00249 * 10 9 7 24 24 H 1.08999 * 109.47095 * 299.99806 * 10 9 7 25 25 H 1.08002 * 120.03364 * 359.97438 * 12 11 10 26 26 H 1.08004 * 119.89275 * 179.97438 * 13 12 11 27 27 H 1.08005 * 119.89126 * 0.02901 * 16 11 10 28 28 H 1.09002 * 110.30308 * 223.88922 * 17 15 14 29 29 H 1.09003 * 110.38787 * 101.77978 * 17 15 14 30 30 H 1.09002 * 110.82432 * 144.56982 * 18 17 15 31 31 H 1.09005 * 110.82182 * 267.92439 * 18 17 15 32 32 H 1.08998 * 110.25544 * 78.26854 * 19 14 13 33 33 H 1.09000 * 110.49386 * 316.01666 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0012 12 6 1.1448 -5.5662 -1.1979 13 6 0.4538 -6.7620 -1.1951 14 6 0.1076 -7.3640 0.0032 15 6 0.4546 -6.7651 1.1996 16 6 1.1476 -5.5660 1.1946 17 6 -0.0322 -7.6119 2.3559 18 6 -1.0875 -8.5593 1.7466 19 6 -0.6416 -8.6551 0.2721 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6249 -2.5571 0.8897 23 1 2.8727 -3.6046 0.8877 24 1 2.8714 -3.6039 -0.8923 25 1 1.4130 -5.0991 -2.1340 26 1 0.1826 -7.2292 -2.1303 27 1 1.4189 -5.0972 2.1291 28 1 -0.4861 -6.9822 3.1211 29 1 0.7919 -8.1862 2.7794 30 1 -1.0531 -9.5375 2.2263 31 1 -2.0855 -8.1274 1.8220 32 1 0.0188 -9.5109 0.1319 33 1 -1.5102 -8.7356 -0.3814 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041203154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:14 Heat of formation + Delta-G solvation = -6.166502 kcal Electronic energy + Delta-G solvation = -13582.589125 eV Core-core repulsion = 11378.568917 eV Total energy + Delta-G solvation = -2204.020208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76162 -36.07782 -33.43711 -31.68107 -30.50194 -28.15279 -27.05339 -24.61547 -22.28359 -21.20011 -20.62430 -19.29233 -16.34756 -15.73906 -15.57573 -14.77832 -14.47880 -14.27081 -12.99827 -12.88821 -12.77773 -12.67234 -12.28965 -12.05939 -11.61242 -11.21233 -11.12081 -11.00086 -10.90309 -10.58701 -10.50837 -10.37599 -9.77942 -9.52594 -9.08511 -8.35883 -8.29498 -7.83608 -5.97682 -4.00983 1.79629 1.83682 3.34574 3.38866 3.41334 4.16416 4.47794 4.59796 4.71054 5.01654 5.27393 5.37501 5.39145 5.41640 5.63883 5.72786 5.76550 5.84561 5.88497 6.04777 6.08946 6.19365 6.24820 6.46600 6.63117 6.69897 6.87072 6.99544 7.04939 7.21198 7.49488 7.70152 7.85154 8.02433 8.42789 9.05955 9.62881 11.13356 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.055947 B = 0.005564 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.356082 B = 5031.232429 C = 5165.181340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.079 4.079 11 C -0.055 4.055 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.108 4.108 17 C -0.081 4.081 18 C -0.121 4.121 19 C -0.076 4.076 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -15.907 1.595 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.116 4.116 11 C -0.055 4.055 12 C -0.139 4.139 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.158 4.158 19 C -0.114 4.114 20 H 0.071 0.929 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.578 -15.787 1.598 15.879 hybrid contribution 0.396 1.067 -0.069 1.140 sum -0.181 -14.721 1.530 14.801 Atomic orbital electron populations 1.69965 1.06072 1.26707 1.50662 1.25022 0.94835 0.99226 0.95310 0.86653 0.79567 0.83117 0.78619 1.20224 1.21289 1.20235 1.21228 0.93015 0.91009 1.50849 0.92651 1.19068 0.93671 0.90431 0.97513 1.20828 0.98325 0.91253 1.01243 1.20255 0.96673 0.96188 0.92355 1.20972 0.99584 0.95255 0.98089 1.20519 0.99578 0.95893 0.96527 1.20475 1.01181 0.97089 0.93516 1.20472 0.98993 0.95290 0.95205 1.20534 0.99549 0.94422 0.98121 1.21003 0.98111 0.96503 0.96138 1.22276 0.98955 0.99347 0.95220 1.21012 0.98867 0.94889 0.96583 0.92937 0.96457 0.96467 0.92297 0.92219 0.86055 0.86941 0.86490 0.90930 0.90699 0.91016 0.91115 0.90926 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.80 4.96 -27.88 -0.14 0.67 16 10 C -0.08 -1.70 5.29 -27.88 -0.15 -1.85 16 11 C -0.05 -1.06 5.13 -104.67 -0.54 -1.60 16 12 C -0.12 -2.14 9.70 -39.62 -0.38 -2.53 16 13 C -0.11 -1.68 10.04 -39.53 -0.40 -2.08 16 14 C -0.12 -1.86 6.15 -104.05 -0.64 -2.50 16 15 C -0.10 -1.58 6.14 -104.21 -0.64 -2.22 16 16 C -0.11 -1.95 9.69 -39.54 -0.38 -2.33 16 17 C -0.08 -0.99 6.77 -26.85 -0.18 -1.17 16 18 C -0.12 -1.26 7.07 -25.32 -0.18 -1.44 16 19 C -0.08 -0.88 6.80 -26.70 -0.18 -1.06 16 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 24 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 25 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 26 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 27 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 277.97 15.07 4.19 4.19 Total: -1.00 -30.93 277.97 -9.35 -40.27 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.03 Total: -2.78 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -4.22 Total: -31.87 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.93 -9.35 -40.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041203154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.108 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds