Wall clock time and date at job start Thu Apr 9 2020 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36038 * 126.35114 * 2 1 4 4 C 1.50697 * 124.95275 * 0.02562 * 3 2 1 5 5 C 1.50696 * 109.47106 * 270.00721 * 4 3 2 6 6 H 1.07991 * 120.00447 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99775 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47344 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47228 * 120.00027 * 9 7 5 12 12 H 1.48503 * 109.47265 * 239.99840 * 9 7 5 13 13 N 1.30112 * 110.09814 * 179.97438 * 3 2 1 14 14 C 1.35785 * 109.64631 * 359.97438 * 13 3 2 15 15 C 1.39735 * 133.60204 * 179.97438 * 14 13 3 16 16 C 1.36605 * 119.88505 * 180.02562 * 15 14 13 17 17 C 1.38772 * 120.67413 * 359.97438 * 16 15 14 18 18 C 1.37857 * 120.44773 * 359.97248 * 17 16 15 19 19 C 1.38055 * 126.34508 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.46947 * 89.97635 * 1 2 3 21 21 H 1.08997 * 109.47423 * 209.97952 * 1 2 3 22 22 H 1.08998 * 109.47078 * 329.98090 * 1 2 3 23 23 H 1.09005 * 109.46516 * 30.00523 * 4 3 2 24 24 H 1.08995 * 109.47200 * 149.99657 * 4 3 2 25 25 H 0.97000 * 120.00050 * 180.02562 * 8 7 5 26 26 H 1.08000 * 120.05646 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.66329 * 179.72373 * 16 15 14 28 28 H 1.07998 * 119.77865 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.15633 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0956 0.0000 4 6 1.7883 2.5231 0.0006 5 6 1.6266 2.9992 -1.4200 6 1 1.8515 2.3349 -2.2412 7 6 1.1914 4.2832 -1.6714 8 7 0.9170 5.0921 -0.6715 9 14 0.9916 4.8736 -3.4323 10 1 1.3619 3.7800 -4.3662 11 1 -0.4216 5.2659 -3.6656 12 1 1.8751 6.0444 -3.6651 13 7 3.5204 0.7315 0.0005 14 6 3.6008 -0.6240 0.0015 15 6 4.6680 -1.5261 0.0019 16 6 4.4231 -2.8700 0.0024 17 6 3.1220 -3.3526 0.0030 18 6 2.0538 -2.4813 0.0037 19 6 2.2831 -1.1120 0.0005 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8901 0.5135 22 1 -0.3633 0.8898 0.5141 23 1 0.8290 2.5817 0.5149 24 1 2.5149 3.1524 0.5143 25 1 0.6105 5.9953 -0.8483 26 1 5.6845 -1.1614 0.0010 27 1 5.2506 -3.5640 -0.0018 28 1 2.9451 -4.4180 0.0038 29 1 1.0431 -2.8620 0.0046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044550795.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:12:16 Heat of formation + Delta-G solvation = 61.927024 kcal Electronic energy + Delta-G solvation = -13717.181818 eV Core-core repulsion = 11412.574023 eV Total energy + Delta-G solvation = -2304.607795 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50353 -37.00118 -33.60746 -33.31777 -30.39453 -29.91982 -27.42872 -26.40729 -23.80439 -21.61056 -21.28609 -19.34241 -16.77576 -16.60016 -16.44701 -15.08763 -15.00756 -14.38488 -13.73802 -13.62514 -12.82451 -12.64758 -12.47315 -12.13982 -11.73171 -11.41307 -11.17768 -11.04503 -10.78991 -10.73798 -10.03312 -9.84291 -9.50909 -9.19479 -8.56828 -7.77261 -7.51799 -6.18695 -4.23348 1.44887 1.94721 3.23128 3.24759 3.31530 3.36522 3.51666 4.31250 4.40304 4.83654 5.13241 5.15616 5.18718 5.32526 5.47621 5.60373 5.80048 5.86445 5.91392 6.05282 6.20105 6.52839 6.83335 6.85900 7.02770 7.16264 7.28737 7.45966 7.76148 7.79778 8.10000 8.73216 8.79054 9.41204 10.91240 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.046361 B = 0.007444 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.809434 B = 3760.702269 C = 3902.805392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.496 5.496 3 C 0.340 3.660 4 C 0.086 3.914 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.516 5.516 14 C 0.055 3.945 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.125 4.125 18 C -0.107 4.107 19 C 0.028 3.972 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -12.757 1.745 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.185 5.185 3 C 0.077 3.923 4 C 0.047 3.953 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.236 5.236 14 C -0.065 4.065 15 C -0.094 4.094 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.128 4.128 19 C -0.081 4.081 20 H 0.091 0.909 21 H 0.090 0.910 22 H 0.111 0.889 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.023 -12.035 1.794 12.169 hybrid contribution -0.917 -0.153 -0.981 1.351 sum -0.894 -12.188 0.814 12.248 Atomic orbital electron populations 1.21855 0.76674 1.03694 1.03399 1.45370 1.07158 1.05156 1.60841 1.25034 0.84338 0.92127 0.90843 1.18098 0.97336 0.80505 0.99314 1.20884 1.45688 0.98163 0.90621 0.92328 1.24947 0.94950 0.96311 0.97703 1.69944 1.44857 1.07277 1.30779 0.86380 0.77732 0.78888 0.84154 1.19671 1.20844 1.20646 1.70612 1.18119 1.09380 1.25455 1.19293 0.91993 0.91151 1.04020 1.19940 0.97243 0.91568 1.00647 1.20475 0.96641 0.94667 1.03919 1.20666 0.92133 0.98543 1.03161 1.19845 0.99089 0.89042 1.04794 1.18948 0.91924 0.89407 1.07814 0.90923 0.91014 0.88925 0.94110 0.92357 0.92551 0.85970 0.86174 0.86148 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.96 59.85 0.66 1.99 15 2 N -0.50 -9.98 3.21 -118.50 -0.38 -10.36 15 3 C 0.34 8.02 7.04 -154.82 -1.09 6.93 15 4 C 0.09 2.19 5.27 -29.04 -0.15 2.03 15 5 C -0.51 -14.13 9.09 -34.44 -0.31 -14.44 15 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 8 N -0.89 -25.16 13.29 55.43 0.74 -24.42 15 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 15 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 13 N -0.52 -12.53 11.27 -8.23 -0.09 -12.62 15 14 C 0.05 1.16 7.23 -84.70 -0.61 0.55 15 15 C -0.07 -1.29 10.05 -39.61 -0.40 -1.69 15 16 C -0.14 -1.94 9.96 -39.97 -0.40 -2.34 15 17 C -0.13 -1.72 10.03 -39.52 -0.40 -2.11 15 18 C -0.11 -1.66 10.05 -39.50 -0.40 -2.06 15 19 C 0.03 0.55 6.88 -83.98 -0.58 -0.03 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.09 1.42 7.00 -51.93 -0.36 1.06 15 23 H 0.04 1.01 7.01 -51.93 -0.36 0.65 15 24 H 0.06 1.59 8.14 -51.93 -0.42 1.17 15 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 26 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.12 1.25 8.06 -52.49 -0.42 0.82 15 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -31.06 257.35 -7.88 -38.94 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.23 Total: -1.98 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.78 Total: -9.52 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.26 Total: -47.40 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.06 -7.88 -38.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044550795.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.872 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds