Wall clock time and date at job start Thu Apr 9 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48502 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46850 * 300.00200 * 3 2 1 6 6 H 1.48491 * 109.47112 * 60.00036 * 3 2 1 7 7 C 1.40504 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 199.47005 * 7 2 1 9 9 C 1.40236 * 119.99912 * 19.46332 * 7 2 1 10 10 C 1.41227 * 120.68745 * 34.79461 * 9 7 2 11 11 N 1.37289 * 133.76390 * 0.04451 * 10 9 7 12 12 H 0.97001 * 126.31741 * 359.95328 * 11 10 9 13 13 C 1.35918 * 107.35663 * 179.97438 * 11 10 9 14 14 N 1.30209 * 109.99305 * 0.02562 * 13 11 10 15 15 C 1.35733 * 109.55869 * 359.97438 * 14 13 11 16 16 C 1.40274 * 132.81780 * 180.02562 * 15 14 13 17 17 C 1.37371 * 121.26429 * 180.22978 * 16 15 14 18 18 C 1.40060 * 120.65657 * 359.48906 * 17 16 15 19 19 C 1.46262 * 120.43543 * 180.23577 * 18 17 16 20 20 O 1.21388 * 120.00168 * 359.76895 * 19 18 17 21 21 H 0.96999 * 119.99674 * 3.53350 * 1 2 3 22 22 H 1.08001 * 125.00041 * 179.97438 * 13 11 10 23 23 H 1.07999 * 119.36704 * 359.95733 * 16 15 14 24 24 H 1.08005 * 119.67231 * 179.72381 * 17 16 15 25 25 H 1.08002 * 119.99988 * 179.77310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6992 1.3463 -0.0006 5 1 1.8804 2.3964 -1.2125 6 1 1.8805 2.3964 1.2124 7 6 2.0077 -1.2168 -0.0005 8 1 3.0414 -1.2437 0.3112 9 6 1.3666 -2.3964 -0.4057 10 6 0.3981 -2.3739 -1.4333 11 7 -0.1291 -1.3797 -2.2198 12 1 0.1046 -0.4388 -2.1898 13 6 -1.0392 -1.9573 -3.0477 14 7 -1.1015 -3.2373 -2.8171 15 6 -0.2338 -3.5631 -1.8255 16 6 0.0901 -4.7777 -1.2030 17 6 1.0236 -4.8365 -0.1968 18 6 1.6882 -3.6796 0.2292 19 6 2.6849 -3.7485 1.2974 20 8 2.9378 -4.8127 1.8238 21 1 -0.4849 0.8385 -0.0518 22 1 -1.6251 -1.4318 -3.7873 23 1 -0.4070 -5.6833 -1.5178 24 1 1.2500 -5.7849 0.2677 25 1 3.1958 -2.8526 1.6180 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306888537.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:06 Heat of formation + Delta-G solvation = 20.461537 kcal Electronic energy + Delta-G solvation = -13820.051354 eV Core-core repulsion = 11377.812386 eV Total energy + Delta-G solvation = -2442.238968 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87029 -37.72214 -35.46767 -34.32634 -31.55151 -29.73005 -28.39694 -25.74005 -23.18672 -21.74475 -20.37877 -19.52484 -18.08756 -16.26868 -15.87413 -15.77798 -14.89579 -14.04714 -14.02041 -13.29245 -13.20871 -12.82276 -12.52259 -12.07369 -11.77226 -11.53588 -11.19288 -10.87137 -10.49961 -10.16801 -9.63781 -9.35712 -9.05236 -8.43062 -7.52817 -7.30079 -7.01641 -4.88692 1.77345 2.57393 2.74336 2.77507 2.82373 3.46843 3.47883 3.98533 4.09180 4.29252 5.21655 5.30681 5.71927 5.81533 6.33974 6.37153 6.49021 6.55967 6.83086 6.90609 6.98132 7.31672 7.61568 7.74014 7.85371 8.00642 8.12732 8.28895 8.44520 8.83534 8.93908 9.49448 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.015942 C = 0.009658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.875681 B = 1755.896327 C = 2898.356564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.068 3.932 3 Si 0.912 3.088 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.441 4.441 8 H 0.100 0.900 9 C 0.187 3.813 10 C 0.015 3.985 11 N -0.552 5.552 12 H 0.413 0.587 13 C 0.210 3.790 14 N -0.520 5.520 15 C 0.087 3.913 16 C -0.208 4.208 17 C -0.018 4.018 18 C -0.331 4.331 19 C 0.394 3.606 20 O -0.532 6.532 21 H 0.292 0.708 22 H 0.196 0.804 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 5.655 -3.366 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.153 4.153 3 Si 0.734 3.266 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.117 0.883 9 C 0.182 3.818 10 C -0.097 4.097 11 N -0.160 5.160 12 H 0.253 0.747 13 C -0.076 4.076 14 N -0.242 5.242 15 C -0.035 4.035 16 C -0.229 4.229 17 C -0.039 4.039 18 C -0.336 4.336 19 C 0.263 3.737 20 O -0.415 6.415 21 H 0.104 0.896 22 H 0.213 0.787 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.115 4.693 -3.451 5.826 hybrid contribution 0.577 2.122 0.272 2.216 sum 0.462 6.815 -3.178 7.534 Atomic orbital electron populations 1.69758 1.07866 1.31011 1.30892 1.26270 0.94878 1.02234 0.91960 0.86150 0.81546 0.79571 0.79334 1.17501 1.19140 1.19178 1.19787 0.99544 0.90957 1.36586 0.88253 1.17751 0.86028 0.92206 0.85845 1.18993 1.03801 0.87754 0.99127 1.42927 1.33030 1.10341 1.29669 0.74743 1.24890 0.94511 0.90414 0.97778 1.70326 1.23662 1.11952 1.18274 1.18985 0.95379 0.93756 0.95371 1.19325 1.05963 0.94354 1.03240 1.20528 0.92933 0.96789 0.93621 1.20894 1.11758 0.93255 1.07691 1.23139 0.79859 0.90794 0.79919 1.90389 1.62480 1.34374 1.54278 0.89642 0.78704 0.88171 0.87329 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.50 10.54 55.58 0.59 -15.91 15 2 C 0.07 1.39 4.44 -17.26 -0.08 1.32 15 3 Si 0.91 15.15 29.61 -169.99 -5.03 10.12 15 4 H -0.25 -4.22 7.11 56.52 0.40 -3.82 15 5 H -0.27 -4.26 7.11 56.52 0.40 -3.85 15 6 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 7 C -0.44 -9.88 8.24 -37.98 -0.31 -10.19 15 8 H 0.10 2.09 7.06 -52.49 -0.37 1.72 15 9 C 0.19 4.52 5.59 -104.58 -0.58 3.94 15 10 C 0.01 0.35 6.15 -83.53 -0.51 -0.16 15 11 N -0.55 -11.26 5.18 -11.42 -0.06 -11.32 15 12 H 0.41 7.66 6.94 -40.82 -0.28 7.38 15 13 C 0.21 3.97 12.97 -89.81 -1.17 2.81 15 14 N -0.52 -11.75 11.28 -12.00 -0.14 -11.88 15 15 C 0.09 2.14 7.20 -84.61 -0.61 1.53 15 16 C -0.21 -4.93 10.02 -39.13 -0.39 -5.32 15 17 C -0.02 -0.43 9.55 -39.21 -0.37 -0.80 15 18 C -0.33 -8.00 6.07 -102.56 -0.62 -8.62 15 19 C 0.39 8.94 11.03 33.95 0.37 9.32 15 20 O -0.53 -13.10 17.16 5.46 0.09 -13.00 15 21 H 0.29 5.54 8.29 -40.82 -0.34 5.20 15 22 H 0.20 2.60 8.06 -52.49 -0.42 2.18 15 23 H 0.10 2.19 8.06 -52.49 -0.42 1.77 15 24 H 0.11 2.43 7.63 -52.48 -0.40 2.03 15 25 H 0.08 1.54 6.85 -52.49 -0.36 1.18 15 LS Contribution 229.26 15.07 3.45 3.45 Total: -1.00 -28.30 229.26 -6.76 -35.06 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -1.39 Total: 9.67 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.28 Total: -6.19 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.39 Total: -39.11 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 15.15 SS G_CDS: -5.03 Total: 10.12 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.30 -6.76 -35.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306888537.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.525 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds