Wall clock time and date at job start Thu Apr 9 2020 14:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48494 * 109.47265 * 274.69406 * 3 2 1 5 5 H 1.48505 * 109.47285 * 34.69766 * 3 2 1 6 6 H 1.48505 * 109.47055 * 154.69291 * 3 2 1 7 7 C 1.40036 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99741 * 197.79534 * 7 2 1 9 9 C 1.40814 * 119.99811 * 17.79344 * 7 2 1 10 10 C 1.40313 * 120.57566 * 24.26963 * 9 7 2 11 11 C 1.39465 * 119.98201 * 180.02562 * 10 9 7 12 12 C 1.46989 * 119.50451 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00146 * 359.97438 * 12 11 10 14 14 C 1.40046 * 120.99266 * 359.97438 * 11 10 9 15 15 C 1.38315 * 120.81616 * 0.02562 * 14 11 10 16 16 N 1.38277 * 133.98566 * 179.97438 * 15 14 11 17 17 H 0.97002 * 126.40439 * 359.97427 * 16 15 14 18 18 C 1.35137 * 107.17835 * 179.97438 * 16 15 14 19 19 N 1.30579 * 110.11303 * 0.02562 * 18 16 15 20 20 C 1.34152 * 109.77755 * 0.02562 * 19 18 16 21 21 H 0.97004 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.01225 * 0.04238 * 10 9 7 23 23 H 1.07999 * 120.00207 * 179.97438 * 12 11 10 24 24 H 1.08005 * 119.58919 * 179.75006 * 14 11 10 25 25 H 1.07997 * 124.94513 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3904 2.1037 -1.3953 5 1 1.4927 2.6220 0.7970 6 1 3.5858 1.4135 0.5985 7 6 2.0083 -1.2128 0.0005 8 1 3.0495 -1.2350 0.2864 9 6 1.3546 -2.4032 -0.3716 10 6 0.2238 -2.3671 -1.2015 11 6 -0.4142 -3.5537 -1.5620 12 6 -1.5983 -3.5037 -2.4315 13 8 -2.0138 -2.4360 -2.8295 14 6 0.0562 -4.7922 -1.1080 15 6 1.1676 -4.8708 -0.2884 16 7 1.8513 -5.9161 0.3049 17 1 1.6364 -6.8593 0.2325 18 6 2.8747 -5.3779 1.0042 19 7 2.8669 -4.0778 0.8826 20 6 1.8430 -3.7010 0.1019 21 1 -0.4851 0.8401 0.0004 22 1 -0.1522 -1.4209 -1.5614 23 1 -2.0985 -4.4177 -2.7159 24 1 -0.4578 -5.6968 -1.3978 25 1 3.5942 -5.9410 1.5800 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306890581.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:08 Heat of formation + Delta-G solvation = 27.397096 kcal Electronic energy + Delta-G solvation = -13548.928922 eV Core-core repulsion = 11106.990703 eV Total energy + Delta-G solvation = -2441.938219 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77750 -38.21984 -35.70343 -33.64677 -31.88757 -29.41246 -28.32818 -25.46279 -23.47230 -21.56202 -20.40101 -19.67308 -17.77345 -16.70076 -15.58048 -15.42249 -14.88082 -14.22700 -14.05368 -13.35924 -13.23425 -12.97264 -12.52978 -11.96770 -11.60599 -11.26183 -10.77202 -10.37841 -10.26183 -10.15320 -9.61670 -9.16947 -8.97980 -8.74211 -7.27683 -7.17090 -6.93909 -4.38472 1.64329 2.75380 3.01387 3.06969 3.16934 3.21530 3.80347 3.92662 4.09955 4.49426 5.14289 5.35721 5.54031 5.80848 6.23035 6.33418 6.60265 6.65518 6.84438 7.00631 7.22906 7.64860 7.71137 7.72092 7.97837 8.30901 8.38321 8.41354 8.60169 8.65998 9.15547 9.90830 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.013171 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.884062 B = 2125.363161 C = 3268.924070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.065 3.935 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.404 4.404 8 H 0.093 0.907 9 C 0.148 3.852 10 C -0.155 4.155 11 C -0.126 4.126 12 C 0.384 3.616 13 O -0.476 6.476 14 C -0.240 4.240 15 C 0.080 3.920 16 N -0.610 5.610 17 H 0.408 0.592 18 C 0.167 3.833 19 N -0.470 5.470 20 C -0.026 4.026 21 H 0.290 0.710 22 H 0.136 0.864 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -6.108 -0.324 6.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.157 4.157 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.430 4.430 8 H 0.111 0.889 9 C 0.144 3.856 10 C -0.177 4.177 11 C -0.128 4.128 12 C 0.244 3.756 13 O -0.351 6.351 14 C -0.264 4.264 15 C -0.029 4.029 16 N -0.223 5.223 17 H 0.244 0.756 18 C -0.116 4.116 19 N -0.188 5.188 20 C -0.147 4.147 21 H 0.101 0.899 22 H 0.154 0.846 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.334 -4.713 -0.122 4.899 hybrid contribution -0.277 -0.718 -0.145 0.783 sum 1.057 -5.431 -0.267 5.540 Atomic orbital electron populations 1.69817 1.07868 1.30459 1.29859 1.26198 0.94923 1.02201 0.92379 0.86089 0.80664 0.79430 0.79551 1.18873 1.19874 1.18019 1.19798 0.98698 0.90501 1.34039 0.88915 1.17770 0.90685 0.88448 0.88727 1.21296 0.98398 0.96742 1.01234 1.20053 0.97911 0.93885 1.00977 1.23954 0.83235 0.91717 0.76654 1.90453 1.62690 1.34919 1.47002 1.18876 1.01015 0.95717 1.10801 1.18596 0.97028 0.87705 0.99579 1.42683 1.27080 1.08186 1.44368 0.75641 1.24514 0.94509 0.90580 1.02002 1.69606 1.21570 1.09761 1.17892 1.20141 0.97071 0.93404 1.04086 0.89903 0.84616 0.90262 0.88888 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.35 10.95 55.55 0.61 -18.75 15 2 C 0.07 1.61 5.15 -17.31 -0.09 1.52 15 3 Si 0.92 18.34 29.60 -169.99 -5.03 13.31 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.40 -10.74 9.09 -37.93 -0.34 -11.08 15 8 H 0.09 2.45 7.91 -52.49 -0.42 2.03 15 9 C 0.15 4.03 5.73 -104.80 -0.60 3.43 15 10 C -0.15 -4.07 8.23 -38.34 -0.32 -4.39 15 11 C -0.13 -2.90 5.85 -105.22 -0.62 -3.52 15 12 C 0.38 7.70 11.41 34.28 0.39 8.09 15 13 O -0.48 -11.08 17.09 5.56 0.09 -10.98 15 14 C -0.24 -5.14 9.73 -38.88 -0.38 -5.51 15 15 C 0.08 1.80 7.28 -84.03 -0.61 1.18 15 16 N -0.61 -10.83 6.21 -11.92 -0.07 -10.90 15 17 H 0.41 5.33 8.96 -40.82 -0.37 4.96 15 18 C 0.17 3.08 12.95 -90.22 -1.17 1.91 15 19 N -0.47 -11.19 11.22 -10.69 -0.12 -11.31 15 20 C -0.03 -0.66 7.19 -82.62 -0.59 -1.25 15 21 H 0.29 6.67 8.30 -40.82 -0.34 6.34 15 22 H 0.14 3.77 5.67 -52.49 -0.30 3.48 15 23 H 0.08 1.21 8.06 -52.49 -0.42 0.79 15 24 H 0.09 1.65 8.06 -52.48 -0.42 1.23 15 25 H 0.19 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 234.03 15.07 3.53 3.53 Total: -1.00 -31.36 234.03 -6.80 -38.16 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -1.48 Total: 6.55 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -4.33 Total: -9.61 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.41 Total: -40.96 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.36 -6.80 -38.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306890581.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.559 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds