Wall clock time and date at job start Thu Apr 9 2020 14:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47279 * 271.07364 * 3 2 1 5 5 C 1.50694 * 109.47848 * 179.97438 * 4 3 2 6 6 C 1.38210 * 119.99044 * 265.02765 * 5 4 3 7 7 C 1.38857 * 120.62647 * 179.97438 * 6 5 4 8 8 C 1.36479 * 120.59658 * 359.73629 * 7 6 5 9 9 C 1.40697 * 119.95455 * 0.51502 * 8 7 6 10 10 C 1.41046 * 120.30622 * 179.76339 * 9 8 7 11 11 H 1.07998 * 119.99473 * 154.26257 * 10 9 8 12 12 C 1.39923 * 120.00236 * 333.97874 * 10 9 8 13 13 N 1.30876 * 120.00207 * 343.14988 * 12 10 9 14 14 Si 1.86803 * 119.99949 * 163.14528 * 12 10 9 15 15 H 1.48495 * 109.46886 * 60.00305 * 14 12 10 16 16 H 1.48497 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46959 * 300.00247 * 14 12 10 18 18 C 1.38714 * 119.98786 * 84.99630 * 5 4 3 19 19 N 1.38747 * 120.29176 * 0.02562 * 18 5 4 20 20 H 1.09007 * 109.47175 * 151.07914 * 3 2 1 21 21 H 1.08997 * 109.47127 * 31.07623 * 3 2 1 22 22 H 1.09007 * 109.47011 * 59.99881 * 4 3 2 23 23 H 1.09010 * 109.47133 * 300.00350 * 4 3 2 24 24 H 1.08000 * 119.68155 * 359.95477 * 6 5 4 25 25 H 1.08001 * 119.69651 * 180.02562 * 7 6 5 26 26 H 1.08006 * 120.02623 * 180.26098 * 8 7 6 27 27 H 0.97003 * 120.00337 * 179.97438 * 13 12 10 28 28 H 0.96999 * 119.99907 * 180.02562 * 19 18 5 29 29 H 0.97005 * 119.99742 * 0.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0261 1.4422 5 6 4.6250 -0.0261 1.4424 6 6 5.3158 -1.2204 1.5240 7 6 6.7043 -1.2357 1.5246 8 6 7.4120 -0.0719 1.4393 9 6 6.7339 1.1584 1.3605 10 6 7.4578 2.3660 1.2770 11 1 7.0101 3.2331 0.8143 12 6 8.7538 2.4424 1.7990 13 7 9.1748 1.5333 2.6411 14 14 9.8832 3.8419 1.2938 15 1 9.2663 5.1379 1.6744 16 1 11.1914 3.6950 1.9811 17 1 10.0901 3.8049 -0.1764 18 6 5.3183 1.1725 1.3599 19 7 4.6304 2.3747 1.2776 20 1 2.9709 0.9004 -0.4970 21 1 2.9717 -0.8793 -0.5304 22 1 2.7550 -0.9258 1.9393 23 1 2.7542 0.8539 1.9727 24 1 4.7705 -2.1503 1.5882 25 1 7.2289 -2.1776 1.5886 26 1 8.4918 -0.0948 1.4363 27 1 10.0733 1.5860 3.0027 28 1 5.1195 3.2103 1.2197 29 1 3.6603 2.3794 1.2780 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306942292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:11 Heat of formation + Delta-G solvation = 30.868103 kcal Electronic energy + Delta-G solvation = -13542.862071 eV Core-core repulsion = 11236.907461 eV Total energy + Delta-G solvation = -2305.954611 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.35800 -36.58766 -34.24138 -33.19729 -32.48348 -29.13864 -27.56810 -25.04710 -23.87982 -20.60332 -19.72747 -17.34187 -16.77756 -16.17599 -15.77700 -14.77268 -14.52582 -14.05381 -13.47742 -12.90122 -12.77961 -12.62176 -12.14428 -11.97615 -11.91106 -11.42765 -11.20930 -11.05704 -10.91223 -10.55390 -10.40398 -9.58386 -9.48275 -9.29192 -9.09518 -7.30769 -6.72275 -6.31303 -4.14127 2.74942 2.90685 2.92377 3.09276 3.11088 3.15889 3.26739 3.97851 4.22524 4.68777 5.15707 5.34483 5.45582 5.67851 5.80729 6.03192 6.09064 6.34599 6.47304 6.65853 6.98617 7.22575 7.29306 7.51350 7.69408 7.72487 7.87964 8.18252 8.23148 8.50507 8.79526 8.84143 9.06100 9.13883 10.30155 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.045062 B = 0.007416 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.223849 B = 3774.563402 C = 4257.227964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.216 3.784 3 C -0.026 4.026 4 C -0.053 4.053 5 C -0.156 4.156 6 C -0.186 4.186 7 C -0.145 4.145 8 C -0.138 4.138 9 C 0.064 3.936 10 C -0.467 4.467 11 H 0.071 0.929 12 C 0.076 3.924 13 N -0.802 5.802 14 Si 0.903 3.097 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.266 1.266 18 C 0.129 3.871 19 N -0.883 5.883 20 H 0.108 0.892 21 H 0.109 0.891 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.278 0.722 28 H 0.392 0.608 29 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -0.160 -2.803 4.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.101 4.101 3 C -0.067 4.067 4 C -0.092 4.092 5 C -0.161 4.161 6 C -0.206 4.206 7 C -0.165 4.165 8 C -0.159 4.159 9 C 0.059 3.941 10 C -0.498 4.498 11 H 0.089 0.911 12 C -0.140 4.140 13 N -0.428 5.428 14 Si 0.728 3.272 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.191 1.191 18 C 0.027 3.973 19 N -0.426 5.426 20 H 0.126 0.874 21 H 0.127 0.873 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.220 0.780 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.799 -0.273 -2.651 5.489 hybrid contribution 0.957 0.921 -0.086 1.331 sum -3.842 0.648 -2.737 4.761 Atomic orbital electron populations 1.81167 1.13338 1.09861 1.09458 1.29665 0.95639 0.92384 0.92453 1.19515 0.80028 1.05971 1.01150 1.20133 0.94394 1.01986 0.92659 1.18511 0.91603 0.92658 1.13338 1.20014 0.93761 0.94890 1.11981 1.20255 0.93667 0.96974 1.05593 1.20803 0.99540 0.90883 1.04700 1.17206 0.88461 0.93836 0.94578 1.19100 0.98435 0.97426 1.34802 0.91086 1.25745 0.98480 0.96845 0.92920 1.69828 1.18246 1.33272 1.21501 0.86466 0.79270 0.81629 0.79833 1.19351 1.20573 1.19090 1.17738 0.91539 0.84857 1.03178 1.41995 1.06869 1.06310 1.87389 0.87432 0.87259 0.91556 0.92019 0.89521 0.89827 0.86707 0.91150 0.77984 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.33 18.54 42.15 0.78 -6.55 15 2 C 0.22 2.91 15.43 -20.76 -0.32 2.59 15 3 C -0.03 -0.32 5.68 -29.52 -0.17 -0.49 15 4 C -0.05 -0.77 4.73 -27.89 -0.13 -0.90 15 5 C -0.16 -2.97 5.15 -104.46 -0.54 -3.51 15 6 C -0.19 -3.76 9.67 -39.36 -0.38 -4.14 15 7 C -0.15 -3.22 9.96 -39.99 -0.40 -3.62 15 8 C -0.14 -3.43 8.63 -39.29 -0.34 -3.77 15 9 C 0.06 1.57 5.57 -106.63 -0.59 0.98 15 10 C -0.47 -11.55 8.50 -37.89 -0.32 -11.88 15 11 H 0.07 1.65 6.70 -52.49 -0.35 1.30 15 12 C 0.08 1.85 5.15 -17.33 -0.09 1.76 15 13 N -0.80 -20.37 11.00 55.55 0.61 -19.76 15 14 Si 0.90 18.25 29.59 -169.99 -5.03 13.22 15 15 H -0.27 -5.36 7.11 56.52 0.40 -4.95 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 18 C 0.13 2.73 6.77 -83.29 -0.56 2.17 15 19 N -0.88 -15.64 8.89 32.72 0.29 -15.35 15 20 H 0.11 1.25 8.14 -51.93 -0.42 0.83 15 21 H 0.11 1.22 8.14 -51.93 -0.42 0.79 15 22 H 0.07 0.92 8.05 -51.92 -0.42 0.51 15 23 H 0.06 0.87 6.82 -51.92 -0.35 0.52 15 24 H 0.09 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.08 1.69 8.06 -52.49 -0.42 1.27 15 26 H 0.12 2.99 6.23 -52.48 -0.33 2.66 15 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 28 H 0.39 6.96 7.06 -40.82 -0.29 6.67 15 29 H 0.38 5.54 6.93 -40.82 -0.28 5.25 15 LS Contribution 257.07 15.07 3.87 3.87 Total: -1.00 -27.21 257.07 -6.17 -33.38 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -2.85 Total: 11.98 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.85 Total: -20.79 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.68 Total: -41.65 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.21 -6.17 -33.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.248 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds