Wall clock time and date at job start Thu Apr 9 2020 14:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30532 * 1 3 3 Si 1.86797 * 119.99798 * 2 1 4 4 H 1.48499 * 109.47316 * 274.99318 * 3 2 1 5 5 H 1.48506 * 109.47198 * 34.98870 * 3 2 1 6 6 H 1.48499 * 109.47187 * 154.99326 * 3 2 1 7 7 C 1.40347 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99640 * 186.09269 * 7 2 1 9 9 C 1.41804 * 120.00125 * 6.09117 * 7 2 1 10 10 O 1.21767 * 120.00151 * 353.20028 * 9 7 2 11 11 C 1.47823 * 119.99848 * 173.20025 * 9 7 2 12 12 C 1.39759 * 120.15435 * 359.72403 * 11 9 7 13 13 C 1.37868 * 119.84208 * 179.71325 * 12 11 9 14 14 C 1.38466 * 120.15149 * 0.58699 * 13 12 11 15 15 C 1.38417 * 120.31544 * 359.66786 * 14 13 12 16 16 C 1.50698 * 119.92006 * 180.02562 * 15 14 13 17 17 C 1.52996 * 117.50227 * 8.64431 * 16 15 14 18 18 C 1.52999 * 60.00101 * 252.51083 * 17 16 15 19 19 C 1.37913 * 120.15272 * 0.04944 * 15 14 13 20 20 H 0.97003 * 120.00116 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.07955 * 359.97438 * 12 11 9 22 22 H 1.07996 * 119.92667 * 180.27615 * 13 12 11 23 23 H 1.08010 * 119.84163 * 179.69217 * 14 13 12 24 24 H 1.08998 * 115.54711 * 154.35545 * 16 15 14 25 25 H 1.08999 * 117.49818 * 359.97438 * 17 16 15 26 26 H 1.08998 * 117.49656 * 145.02174 * 17 16 15 27 27 H 1.09004 * 117.50055 * 252.51072 * 18 17 16 28 28 H 1.08998 * 117.52230 * 107.47836 * 18 17 16 29 29 H 1.08001 * 120.07225 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3812 2.1074 -1.3947 5 1 1.4933 2.6200 0.8028 6 1 3.5856 1.4121 0.5918 7 6 2.0071 -1.2154 -0.0005 8 1 3.0825 -1.2181 0.0987 9 6 1.3041 -2.4400 -0.1314 10 8 0.0865 -2.4474 -0.1188 11 6 2.0494 -3.7075 -0.2832 12 6 3.4468 -3.7021 -0.3039 13 6 4.1356 -4.8886 -0.4398 14 6 3.4458 -6.0824 -0.5678 15 6 2.0618 -6.0947 -0.5534 16 6 1.3201 -7.3991 -0.6928 17 6 2.1426 -8.6883 -0.6430 18 6 1.5502 -8.2096 -1.9700 19 6 1.3600 -4.9159 -0.4123 20 1 -0.4850 0.8401 0.0004 21 1 3.9859 -2.7711 -0.2094 22 1 5.2154 -4.8865 -0.4515 23 1 3.9904 -7.0085 -0.6790 24 1 0.3219 -7.4214 -0.2557 25 1 3.2202 -8.5929 -0.5098 26 1 1.6855 -9.5589 -0.1728 27 1 0.7034 -8.7654 -2.3728 28 1 2.2377 -7.7991 -2.7096 29 1 0.2801 -4.9269 -0.4017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306965064.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:12 Heat of formation + Delta-G solvation = -19.540662 kcal Electronic energy + Delta-G solvation = -13441.025653 eV Core-core repulsion = 11100.592403 eV Total energy + Delta-G solvation = -2340.433250 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58932 -38.72926 -37.17465 -34.84246 -31.83275 -31.72205 -28.78615 -25.05394 -24.09285 -23.16462 -22.13825 -20.64172 -18.41159 -18.07684 -16.89183 -16.53914 -15.88543 -15.51419 -15.08592 -14.66450 -14.52021 -14.34651 -13.39721 -13.32486 -13.26110 -12.75257 -12.59578 -12.39154 -12.09315 -12.05288 -11.71823 -11.47986 -11.26560 -11.02913 -9.67450 -9.65300 -9.36263 -8.39335 -7.12386 0.22841 0.52878 1.36263 1.37057 1.54698 2.17869 2.19907 2.76396 3.15525 3.63979 3.71120 3.94928 4.05909 4.15879 4.22705 4.32791 4.38564 4.62672 4.74235 4.81387 4.96568 5.13169 5.16035 5.18611 5.24875 5.29010 5.59462 5.70536 5.78625 5.93237 6.19149 6.65250 6.75235 8.19779 8.44614 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056811 B = 0.006869 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.742125 B = 4075.566203 C = 4478.398504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.019 3.981 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.542 4.542 8 H 0.097 0.903 9 C 0.357 3.643 10 O -0.601 6.601 11 C -0.142 4.142 12 C -0.108 4.108 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.064 4.064 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.165 4.165 19 C -0.112 4.112 20 H 0.283 0.717 21 H 0.131 0.869 22 H 0.160 0.840 23 H 0.156 0.844 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 -10.884 -1.939 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.199 4.199 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.166 1.166 7 C -0.572 4.572 8 H 0.115 0.885 9 C 0.258 3.742 10 O -0.496 6.496 11 C -0.143 4.143 12 C -0.126 4.126 13 C -0.137 4.137 14 C -0.137 4.137 15 C -0.064 4.064 16 C -0.163 4.163 17 C -0.190 4.190 18 C -0.201 4.201 19 C -0.131 4.131 20 H 0.094 0.906 21 H 0.148 0.852 22 H 0.177 0.823 23 H 0.174 0.826 24 H 0.120 0.880 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.908 -10.865 -1.932 14.182 hybrid contribution -0.448 1.016 0.075 1.113 sum 8.460 -9.849 -1.856 13.116 Atomic orbital electron populations 1.70118 1.10148 1.30010 1.31437 1.27383 0.95551 1.05856 0.91145 0.84971 0.79232 0.74346 0.79648 1.18321 1.19157 1.16562 1.21476 0.96631 0.92323 1.46759 0.88503 1.18997 0.88224 0.88518 0.78484 1.90418 1.17374 1.89228 1.52556 1.21537 0.96001 0.96161 1.00609 1.21609 0.92511 0.99668 0.98784 1.21461 1.01221 0.91388 0.99648 1.21426 0.92755 0.99174 1.00366 1.19297 0.94262 0.92825 1.00005 1.21012 1.00226 0.89615 1.05478 1.23185 1.00341 0.95677 0.99788 1.23102 1.03959 1.02203 0.90871 1.21081 0.99130 0.92369 1.00505 0.90649 0.85156 0.82286 0.82621 0.88032 0.87119 0.86731 0.87231 0.88660 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.92 11.76 21.89 0.26 -47.67 15 2 C 0.02 1.08 5.49 85.40 0.47 1.54 15 3 Si 1.00 39.78 29.57 68.60 2.03 41.80 15 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 15 6 H -0.24 -8.87 7.11 99.48 0.71 -8.16 15 7 C -0.54 -31.22 8.83 23.67 0.21 -31.01 15 8 H 0.10 4.94 6.08 -2.91 -0.02 4.92 15 9 C 0.36 22.09 6.91 25.69 0.18 22.26 15 10 O -0.60 -42.26 14.93 -4.56 -0.07 -42.33 15 11 C -0.14 -7.23 5.88 -20.02 -0.12 -7.34 15 12 C -0.11 -4.41 9.44 22.55 0.21 -4.19 15 13 C -0.12 -3.73 10.03 22.24 0.22 -3.51 15 14 C -0.12 -3.55 9.30 22.37 0.21 -3.34 15 15 C -0.06 -2.27 5.61 -19.90 -0.11 -2.38 15 16 C -0.15 -4.07 6.04 -11.54 -0.07 -4.14 15 17 C -0.15 -2.95 9.86 30.59 0.30 -2.65 15 18 C -0.16 -3.57 10.16 30.59 0.31 -3.26 15 19 C -0.11 -5.24 9.28 22.55 0.21 -5.03 15 20 H 0.28 15.27 8.29 -92.71 -0.77 14.50 15 21 H 0.13 5.12 6.23 -2.91 -0.02 5.10 15 22 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 23 H 0.16 3.29 6.00 -2.91 -0.02 3.27 15 24 H 0.10 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.11 1.84 6.17 -2.39 -0.01 1.82 15 26 H 0.11 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.11 2.03 8.14 -2.38 -0.02 2.01 15 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 29 H 0.09 4.73 7.65 -2.91 -0.02 4.71 15 Total: -1.00 -76.72 255.45 5.40 -71.32 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.16 Total: 19.93 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 2.02 Total: -43.05 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.26 Total: -47.67 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.07 Total: -42.33 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -76.72 5.40 -71.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306965064.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.779 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds