Wall clock time and date at job start Thu Apr 9 2020 14:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46981 * 101.44448 * 3 2 1 5 5 C 1.50701 * 109.47124 * 179.97438 * 4 3 2 6 6 C 1.36486 * 120.02527 * 264.99961 * 5 4 3 7 7 C 1.38854 * 120.59533 * 179.97438 * 6 5 4 8 8 C 1.38208 * 120.62847 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.02473 * 359.97438 * 8 7 6 10 10 N 1.38735 * 120.29521 * 180.02562 * 9 8 7 11 11 C 1.40701 * 120.02067 * 84.72561 * 5 4 3 12 12 C 1.41040 * 120.30719 * 359.97433 * 11 5 4 13 13 H 1.08006 * 120.00366 * 309.15964 * 12 11 5 14 14 C 1.39931 * 120.00198 * 129.16028 * 12 11 5 15 15 N 1.30876 * 120.00196 * 168.46208 * 14 12 11 16 16 Si 1.86800 * 119.99800 * 348.46602 * 14 12 11 17 17 H 1.48504 * 109.46934 * 94.80196 * 16 14 12 18 18 H 1.48495 * 109.47257 * 214.80106 * 16 14 12 19 19 H 1.48504 * 109.47067 * 334.80509 * 16 14 12 20 20 H 1.08995 * 109.47359 * 341.44044 * 3 2 1 21 21 H 1.09005 * 109.46817 * 221.43706 * 3 2 1 22 22 H 1.09005 * 109.47322 * 59.99540 * 4 3 2 23 23 H 1.09002 * 109.46890 * 299.99817 * 4 3 2 24 24 H 1.07994 * 119.70178 * 0.02562 * 6 5 4 25 25 H 1.07996 * 119.68845 * 180.02562 * 7 6 5 26 26 H 1.08001 * 119.99082 * 180.02562 * 8 7 6 27 27 H 0.97003 * 120.00285 * 351.26800 * 10 9 8 28 28 H 0.97001 * 120.00628 * 171.27597 * 10 9 8 29 29 H 0.96999 * 120.00469 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1179 0.2871 -1.4138 5 6 4.6249 0.2884 -1.4137 6 6 5.3068 1.4633 -1.2812 7 6 6.6953 1.4781 -1.2791 8 6 7.4122 0.3040 -1.4115 9 6 6.7455 -0.9047 -1.5478 10 7 7.4596 -2.0867 -1.6806 11 6 5.3299 -0.9222 -1.5445 12 6 4.6328 -2.1412 -1.6755 13 1 3.8527 -2.3955 -0.9731 14 6 4.9518 -3.0214 -2.7155 15 7 4.4738 -4.2398 -2.7115 16 14 6.0599 -2.4574 -4.1095 17 1 7.4620 -2.8497 -3.8170 18 1 5.6223 -3.0934 -5.3780 19 1 5.9764 -0.9806 -4.2417 20 1 2.9719 -0.9733 0.3271 21 1 2.9710 0.7713 0.6801 22 1 2.7540 1.2612 -1.7409 23 1 2.7549 -0.4834 -2.0940 24 1 4.7616 2.3895 -1.1763 25 1 7.2200 2.4161 -1.1729 26 1 8.4920 0.3275 -1.4081 27 1 8.4212 -2.0611 -1.8058 28 1 6.9974 -2.9389 -1.6485 29 1 4.6952 -4.8500 -3.4322 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307525330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:20 Heat of formation + Delta-G solvation = 21.695730 kcal Electronic energy + Delta-G solvation = -13919.674004 eV Core-core repulsion = 11613.321650 eV Total energy + Delta-G solvation = -2306.352355 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14857 -37.80266 -35.87046 -35.14732 -33.61075 -31.31923 -29.36402 -26.82965 -25.06244 -22.23904 -21.28625 -19.39788 -18.30640 -17.39159 -16.95722 -16.80901 -15.95576 -15.40903 -14.87535 -14.78352 -14.47819 -14.24623 -13.93253 -13.44747 -13.16001 -13.06089 -12.93976 -12.64778 -12.24507 -11.94605 -11.86239 -11.43763 -11.19411 -10.98598 -10.56430 -9.05330 -8.52748 -7.99286 -6.17215 0.93078 1.20728 1.41755 1.49936 1.57361 1.85130 1.87207 2.29433 2.88856 3.18318 3.51951 3.61141 4.34503 4.47330 4.54563 4.61513 4.80226 4.90208 5.04201 5.15486 5.30352 5.37721 5.55986 5.68920 5.87870 6.09032 6.25454 6.44770 6.56687 6.65690 6.87368 7.08663 7.18295 7.40902 8.58309 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.012958 C = 0.009367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.704128 B = 2160.372971 C = 2988.414122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.243 3.757 3 C -0.012 4.012 4 C -0.051 4.051 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.196 4.196 9 C 0.132 3.868 10 N -0.877 5.877 11 C -0.001 4.001 12 C -0.478 4.478 13 H 0.061 0.939 14 C 0.043 3.957 15 N -0.891 5.891 16 Si 0.955 3.045 17 H -0.243 1.243 18 H -0.316 1.316 19 H -0.273 1.273 20 H 0.104 0.896 21 H 0.138 0.862 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.119 0.881 27 H 0.395 0.605 28 H 0.395 0.605 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 8.390 1.987 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.073 4.073 3 C -0.052 4.052 4 C -0.090 4.090 5 C -0.119 4.119 6 C -0.170 4.170 7 C -0.165 4.165 8 C -0.219 4.219 9 C 0.029 3.971 10 N -0.421 5.421 11 C -0.006 4.006 12 C -0.512 4.512 13 H 0.079 0.921 14 C -0.164 4.164 15 N -0.523 5.523 16 Si 0.782 3.218 17 H -0.167 1.167 18 H -0.246 1.246 19 H -0.198 1.198 20 H 0.122 0.878 21 H 0.156 0.844 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.137 0.863 27 H 0.224 0.776 28 H 0.226 0.774 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.675 8.189 1.929 9.625 hybrid contribution 0.824 -0.834 -0.802 1.420 sum 5.499 7.355 1.128 9.252 Atomic orbital electron populations 1.81150 1.14586 1.11617 1.10958 1.29794 0.95658 0.90821 0.91037 1.19427 0.78954 1.06469 1.00326 1.20132 0.92061 1.02019 0.94739 1.19627 0.94366 0.92319 1.05598 1.20550 0.94249 0.97121 1.05124 1.20843 0.94088 0.97121 1.04424 1.20591 0.99053 0.91769 1.10498 1.18398 0.91979 0.87050 0.99683 1.42524 1.09451 1.06100 1.84062 1.17435 0.89967 0.93602 0.99570 1.18845 1.19165 1.00698 1.12485 0.92137 1.26333 0.96447 0.93534 1.00121 1.69761 1.43565 1.05964 1.33054 0.85745 0.80520 0.78915 0.76586 1.16693 1.24554 1.19814 0.87847 0.84426 0.89832 0.92780 0.85286 0.85286 0.86329 0.77617 0.77384 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.57 18.54 20.01 0.37 -18.20 15 2 C 0.24 7.75 15.43 89.44 1.38 9.13 15 3 C -0.01 -0.34 5.68 28.79 0.16 -0.17 15 4 C -0.05 -1.67 4.80 29.85 0.14 -1.53 15 5 C -0.12 -4.36 5.15 -19.67 -0.10 -4.46 15 6 C -0.15 -4.84 9.58 22.01 0.21 -4.63 15 7 C -0.15 -4.62 10.03 22.41 0.22 -4.39 15 8 C -0.20 -6.82 9.89 22.38 0.22 -6.60 15 9 C 0.13 5.32 5.24 38.99 0.20 5.53 15 10 N -0.88 -32.91 6.03 -50.39 -0.30 -33.22 15 11 C 0.00 -0.03 4.52 -21.17 -0.10 -0.12 15 12 C -0.48 -23.75 7.63 23.37 0.18 -23.58 15 13 H 0.06 3.25 6.99 -2.91 -0.02 3.23 15 14 C 0.04 2.17 4.35 85.25 0.37 2.54 15 15 N -0.89 -48.26 13.93 21.83 0.30 -47.96 15 16 Si 0.95 42.46 24.17 68.60 1.66 44.12 15 17 H -0.24 -9.65 6.31 99.48 0.63 -9.02 15 18 H -0.32 -14.50 7.11 99.48 0.71 -13.79 15 19 H -0.27 -12.72 7.06 99.48 0.70 -12.02 15 20 H 0.10 3.24 7.06 -2.39 -0.02 3.22 15 21 H 0.14 2.91 8.14 -2.38 -0.02 2.89 15 22 H 0.08 2.30 8.04 -2.38 -0.02 2.28 15 23 H 0.05 2.11 7.32 -2.39 -0.02 2.09 15 24 H 0.13 3.29 8.05 -2.91 -0.02 3.27 15 25 H 0.13 3.25 8.06 -2.91 -0.02 3.23 15 26 H 0.12 3.51 8.06 -2.91 -0.02 3.49 15 27 H 0.40 12.17 8.85 -92.71 -0.82 11.35 15 28 H 0.40 16.30 5.93 -92.71 -0.55 15.75 15 29 H 0.28 14.06 8.30 -92.71 -0.77 13.29 15 Total: -1.00 -58.93 250.27 4.66 -54.27 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.27 Total: 29.26 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 2.90 Total: -28.28 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: 0.37 Total: -99.37 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.66 Total: 44.12 kcal Total: -58.93 4.66 -54.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307525330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.967 kcal (2) G-P(sol) polarization free energy of solvation -58.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds