Wall clock time and date at job start Thu Apr 9 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 120.00315 * 2 1 4 4 H 1.07995 * 120.00096 * 202.05327 * 3 2 1 5 5 C 1.38815 * 119.99808 * 22.05116 * 3 2 1 6 6 N 1.31616 * 119.99736 * 12.34941 * 5 3 2 7 7 Si 1.86797 * 119.99795 * 192.34408 * 5 3 2 8 8 H 1.48502 * 109.47253 * 60.00136 * 7 5 3 9 9 H 1.48501 * 109.46803 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47278 * 300.00083 * 7 5 3 11 11 C 1.46498 * 119.99841 * 179.97438 * 2 1 3 12 12 N 1.46497 * 109.47315 * 90.00201 * 11 2 1 13 13 C 1.47096 * 125.55336 * 89.99851 * 12 11 2 14 14 C 1.54088 * 103.79369 * 180.02562 * 13 12 11 15 15 O 1.45696 * 104.14133 * 359.93087 * 14 13 12 16 16 C 1.33999 * 125.55567 * 270.02376 * 12 11 2 17 17 S 1.71199 * 123.08207 * 359.97438 * 16 12 11 18 18 H 1.09001 * 109.47657 * 274.37576 * 1 2 3 19 19 H 1.09010 * 109.46911 * 34.37591 * 1 2 3 20 20 H 1.09003 * 109.47264 * 154.37318 * 1 2 3 21 21 H 0.97004 * 119.99446 * 179.97438 * 6 5 3 22 22 H 1.09002 * 109.47240 * 330.00100 * 11 2 1 23 23 H 1.09009 * 109.47310 * 210.00622 * 11 2 1 24 24 H 1.09006 * 110.55730 * 61.44665 * 13 12 11 25 25 H 1.08996 * 110.68604 * 298.66351 * 13 12 11 26 26 H 1.09003 * 110.51552 * 118.63808 * 14 13 12 27 27 H 1.09001 * 110.51912 * 241.22470 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2201 -0.3512 5 6 1.5318 2.3441 0.4513 6 7 0.3891 2.2703 1.1003 7 14 2.3222 4.0073 0.1378 8 1 2.4611 4.2215 -1.3251 9 1 1.4703 5.0771 0.7166 10 1 3.6639 4.0455 0.7732 11 6 2.1974 -1.2687 0.0006 12 7 2.4416 -1.6923 -1.3804 13 6 3.6206 -1.3412 -2.1869 14 6 3.3642 -2.0400 -3.5361 15 8 2.0820 -2.7073 -3.3532 16 6 1.6272 -2.4622 -2.1149 17 16 0.1424 -3.0791 -1.5267 18 1 -0.3634 0.0784 1.0246 19 1 -0.3633 0.8483 -0.5803 20 1 -0.3634 -0.9266 -0.4445 21 1 -0.0424 3.0796 1.4160 22 1 1.6083 -2.0282 0.5147 23 1 3.1499 -1.1382 0.5145 24 1 4.5295 -1.7251 -1.7235 25 1 3.6874 -0.2616 -2.3216 26 1 3.3022 -1.3069 -4.3403 27 1 4.1479 -2.7685 -3.7441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307577198.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:26 Heat of formation + Delta-G solvation = 18.926955 kcal Electronic energy + Delta-G solvation = -12997.781988 eV Core-core repulsion = 10690.920427 eV Total energy + Delta-G solvation = -2306.861561 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07077 -36.45996 -34.27065 -31.39193 -30.44922 -26.61476 -25.91316 -23.59488 -22.73102 -21.17655 -17.88807 -17.06465 -16.80798 -16.13840 -15.13833 -14.97125 -13.96944 -13.90896 -13.39198 -13.30694 -12.43251 -12.26773 -11.93557 -11.42381 -11.08563 -10.97236 -10.84048 -10.48280 -10.24857 -10.21567 -9.45857 -8.83011 -7.49756 -7.17313 -7.03719 -5.98266 -3.51281 1.57854 2.03587 3.13971 3.26695 3.28666 3.29347 3.57141 4.25726 4.29655 4.63954 4.83813 5.21340 5.22155 5.35481 5.40084 5.61400 6.04405 6.19049 7.00160 7.04999 7.16447 7.45879 7.53923 7.74236 8.09358 8.92227 9.52522 9.99300 11.01846 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.010291 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.209505 B = 2720.243678 C = 3227.120012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.560 5.560 3 C -0.291 4.291 4 H 0.070 0.930 5 C 0.018 3.982 6 N -0.886 5.886 7 Si 0.911 3.089 8 H -0.282 1.282 9 H -0.286 1.286 10 H -0.280 1.280 11 C 0.342 3.658 12 N -0.547 5.547 13 C 0.041 3.959 14 C 0.024 3.976 15 O -0.291 6.291 16 C 0.494 3.506 17 S -0.582 6.582 18 H 0.036 0.964 19 H 0.039 0.961 20 H 0.047 0.953 21 H 0.259 0.741 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 -4.712 -5.940 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.277 5.277 3 C -0.421 4.421 4 H 0.088 0.912 5 C -0.183 4.183 6 N -0.527 5.527 7 Si 0.739 3.261 8 H -0.208 1.208 9 H -0.212 1.212 10 H -0.206 1.206 11 C 0.134 3.866 12 N -0.270 5.270 13 C -0.085 4.085 14 C -0.055 4.055 15 O -0.194 6.194 16 C 0.193 3.807 17 S -0.451 6.451 18 H 0.054 0.946 19 H 0.058 0.942 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.115 0.885 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.808 -4.882 -5.447 10.699 hybrid contribution 1.396 1.576 -0.627 2.197 sum 9.204 -3.306 -6.073 11.512 Atomic orbital electron populations 1.21379 0.80749 0.98795 1.00151 1.44652 1.03428 1.00650 1.78949 1.19161 0.97843 0.85619 1.39429 0.91186 1.25103 0.97159 0.98902 0.97169 1.70122 1.17601 1.27994 1.36971 0.86269 0.78616 0.83074 0.78108 1.20819 1.21193 1.20561 1.21425 0.97756 0.89718 0.77678 1.52436 1.16503 1.41633 1.16458 1.23327 0.91682 1.03173 0.90325 1.24552 0.84685 0.97505 0.98742 1.87544 1.35382 1.67342 1.29109 1.25949 0.91968 0.81934 0.80891 1.93235 1.08854 1.66607 1.76398 0.94594 0.94201 0.93483 0.93021 0.88508 0.89611 0.88705 0.87872 0.87747 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.40 8.97 59.84 0.54 3.93 15 2 N -0.56 -13.42 3.16 -184.86 -0.58 -14.01 15 3 C -0.29 -7.37 9.67 -15.06 -0.15 -7.52 15 4 H 0.07 1.66 7.86 -52.49 -0.41 1.25 15 5 C 0.02 0.49 5.11 -17.43 -0.09 0.40 15 6 N -0.89 -24.82 10.62 55.49 0.59 -24.23 15 7 Si 0.91 20.41 29.57 -169.99 -5.03 15.39 15 8 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 11 C 0.34 6.64 6.34 -63.76 -0.40 6.23 15 12 N -0.55 -9.44 3.20 -178.69 -0.57 -10.01 15 13 C 0.04 0.51 7.69 -3.15 -0.02 0.49 15 14 C 0.02 0.26 8.22 37.73 0.31 0.57 15 15 O -0.29 -4.77 11.12 -14.43 -0.16 -4.93 15 16 C 0.49 9.39 8.03 53.71 0.43 9.82 15 17 S -0.58 -13.08 27.60 -107.50 -2.97 -16.05 15 18 H 0.04 0.97 7.41 -51.93 -0.38 0.58 15 19 H 0.04 1.09 7.21 -51.92 -0.37 0.72 15 20 H 0.05 1.16 5.52 -51.93 -0.29 0.87 15 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 22 H 0.10 1.93 7.29 -51.93 -0.38 1.56 15 23 H 0.09 1.49 8.04 -51.92 -0.42 1.08 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.10 1.34 8.14 -51.93 -0.42 0.91 15 26 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 15 LS Contribution 244.83 15.07 3.69 3.69 Total: -1.00 -31.45 244.83 -7.50 -38.95 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.08 Total: -2.71 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 0.61 Total: 13.92 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.57 Total: -48.25 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.16 Total: -4.93 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 16 Polarization: -13.08 SS G_CDS: -2.97 Total: -16.05 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.45 -7.50 -38.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307577198.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.878 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds