Wall clock time and date at job start Thu Apr 9 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 120.00315 * 2 1 4 4 H 1.07995 * 120.00096 * 202.05327 * 3 2 1 5 5 C 1.38815 * 119.99808 * 22.05116 * 3 2 1 6 6 N 1.31616 * 119.99736 * 12.34941 * 5 3 2 7 7 Si 1.86797 * 119.99795 * 192.34408 * 5 3 2 8 8 H 1.48502 * 109.47253 * 60.00136 * 7 5 3 9 9 H 1.48501 * 109.46803 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47278 * 300.00083 * 7 5 3 11 11 C 1.46498 * 119.99841 * 179.97438 * 2 1 3 12 12 N 1.46497 * 109.47315 * 90.00201 * 11 2 1 13 13 C 1.47096 * 125.55336 * 89.99851 * 12 11 2 14 14 C 1.54088 * 103.79369 * 180.02562 * 13 12 11 15 15 O 1.45696 * 104.14133 * 359.93087 * 14 13 12 16 16 C 1.33999 * 125.55567 * 270.02376 * 12 11 2 17 17 S 1.71199 * 123.08207 * 359.97438 * 16 12 11 18 18 H 1.09001 * 109.47657 * 274.37576 * 1 2 3 19 19 H 1.09010 * 109.46911 * 34.37591 * 1 2 3 20 20 H 1.09003 * 109.47264 * 154.37318 * 1 2 3 21 21 H 0.97004 * 119.99446 * 179.97438 * 6 5 3 22 22 H 1.09002 * 109.47240 * 330.00100 * 11 2 1 23 23 H 1.09009 * 109.47310 * 210.00622 * 11 2 1 24 24 H 1.09006 * 110.55730 * 61.44665 * 13 12 11 25 25 H 1.08996 * 110.68604 * 298.66351 * 13 12 11 26 26 H 1.09003 * 110.51552 * 118.63808 * 14 13 12 27 27 H 1.09001 * 110.51912 * 241.22470 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2201 -0.3512 5 6 1.5318 2.3441 0.4513 6 7 0.3891 2.2703 1.1003 7 14 2.3222 4.0073 0.1378 8 1 2.4611 4.2215 -1.3251 9 1 1.4703 5.0771 0.7166 10 1 3.6639 4.0455 0.7732 11 6 2.1974 -1.2687 0.0006 12 7 2.4416 -1.6923 -1.3804 13 6 3.6206 -1.3412 -2.1869 14 6 3.3642 -2.0400 -3.5361 15 8 2.0820 -2.7073 -3.3532 16 6 1.6272 -2.4622 -2.1149 17 16 0.1424 -3.0791 -1.5267 18 1 -0.3634 0.0784 1.0246 19 1 -0.3633 0.8483 -0.5803 20 1 -0.3634 -0.9266 -0.4445 21 1 -0.0424 3.0796 1.4160 22 1 1.6083 -2.0282 0.5147 23 1 3.1499 -1.1382 0.5145 24 1 4.5295 -1.7251 -1.7235 25 1 3.6874 -0.2616 -2.3216 26 1 3.3022 -1.3069 -4.3403 27 1 4.1479 -2.7685 -3.7441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307577198.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:26 Heat of formation + Delta-G solvation = -2.984378 kcal Electronic energy + Delta-G solvation = -12998.732135 eV Core-core repulsion = 10690.920427 eV Total energy + Delta-G solvation = -2307.811708 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41647 -38.12920 -35.90563 -33.12743 -31.70173 -28.40587 -27.79529 -24.71213 -24.34475 -22.86522 -19.44589 -18.71604 -18.13887 -17.51412 -16.89104 -16.44474 -15.59860 -15.36053 -15.16507 -14.46589 -13.91496 -13.60831 -13.42032 -13.11928 -12.83314 -12.68685 -12.52462 -12.33981 -12.09060 -12.01705 -10.82445 -10.70103 -9.28467 -9.04173 -8.81623 -7.92031 -5.49736 0.05143 0.51995 1.45112 1.48063 1.55390 1.81789 2.33404 2.43856 3.27128 3.30537 3.51161 3.61042 3.88956 4.39087 4.43284 4.59682 4.65422 4.70069 5.01355 5.26420 5.54123 5.58038 5.67047 5.80253 6.14822 6.96244 7.63592 8.09874 9.08707 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.010291 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.209505 B = 2720.243678 C = 3227.120012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.583 5.583 3 C -0.288 4.288 4 H 0.092 0.908 5 C -0.044 4.044 6 N -0.931 5.931 7 Si 0.977 3.023 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.354 3.646 12 N -0.543 5.543 13 C 0.038 3.962 14 C 0.023 3.977 15 O -0.298 6.298 16 C 0.514 3.486 17 S -0.671 6.671 18 H 0.007 0.993 19 H 0.008 0.992 20 H 0.051 0.949 21 H 0.251 0.749 22 H 0.085 0.915 23 H 0.117 0.883 24 H 0.138 0.862 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.379 -4.763 -7.492 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.303 5.303 3 C -0.417 4.417 4 H 0.110 0.890 5 C -0.241 4.241 6 N -0.574 5.574 7 Si 0.804 3.196 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.190 1.190 11 C 0.147 3.853 12 N -0.263 5.263 13 C -0.086 4.086 14 C -0.054 4.054 15 O -0.200 6.200 16 C 0.209 3.791 17 S -0.540 6.540 18 H 0.026 0.974 19 H 0.027 0.973 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.103 0.897 23 H 0.134 0.866 24 H 0.156 0.844 25 H 0.122 0.878 26 H 0.146 0.854 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.368 -4.975 -7.060 14.276 hybrid contribution 0.524 1.483 -0.288 1.599 sum 11.891 -3.492 -7.348 14.408 Atomic orbital electron populations 1.20939 0.82454 0.97384 0.97746 1.44704 1.02647 1.01942 1.80974 1.19622 0.98474 0.85889 1.37688 0.89044 1.25973 0.97907 1.02539 0.97655 1.70305 1.19616 1.28140 1.39387 0.85209 0.77921 0.78512 0.77919 1.20272 1.22646 1.18970 1.21409 0.98562 0.87628 0.77705 1.51582 1.17901 1.40469 1.16352 1.23711 0.90563 1.03800 0.90549 1.25105 0.82961 0.98929 0.98366 1.87522 1.38002 1.67480 1.26970 1.25264 0.90623 0.81339 0.81827 1.93433 1.12846 1.69713 1.78041 0.97430 0.97303 0.93075 0.93945 0.89669 0.86557 0.84426 0.87781 0.85434 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 8.44 8.97 127.77 1.15 9.58 15 2 N -0.58 -27.63 3.16 -738.76 -2.34 -29.96 15 3 C -0.29 -14.12 9.67 84.03 0.81 -13.31 15 4 H 0.09 4.00 7.86 -2.91 -0.02 3.98 15 5 C -0.04 -2.30 5.11 84.86 0.43 -1.87 15 6 N -0.93 -53.73 10.62 21.65 0.23 -53.50 15 7 Si 0.98 41.59 29.57 68.60 2.03 43.62 15 8 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 9 H -0.30 -13.29 7.11 99.48 0.71 -12.59 15 10 H -0.26 -10.49 7.11 99.48 0.71 -9.79 15 11 C 0.35 13.03 6.34 170.96 1.08 14.11 15 12 N -0.54 -17.04 3.20 -832.01 -2.66 -19.70 15 13 C 0.04 0.73 7.69 86.63 0.67 1.39 15 14 C 0.02 0.37 8.22 72.35 0.59 0.96 15 15 O -0.30 -8.77 11.12 -74.56 -0.83 -9.60 15 16 C 0.51 18.56 8.03 129.91 1.04 19.60 15 17 S -0.67 -30.62 27.60 -56.49 -1.56 -32.18 15 18 H 0.01 0.42 7.41 -2.39 -0.02 0.40 15 19 H 0.01 0.47 7.21 -2.38 -0.02 0.46 15 20 H 0.05 2.62 5.52 -2.39 -0.01 2.60 15 21 H 0.25 14.18 8.31 -92.71 -0.77 13.41 15 22 H 0.09 3.36 7.29 -2.39 -0.02 3.34 15 23 H 0.12 3.62 8.04 -2.38 -0.02 3.60 15 24 H 0.14 1.60 8.14 -2.38 -0.02 1.58 15 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.13 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.15 1.14 8.14 -2.39 -0.02 1.12 15 Total: -1.00 -71.62 244.83 1.81 -69.81 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.16 Total: 1.04 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: 5.78 Total: 30.47 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.77 Total: -103.17 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.83 Total: -9.60 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: -30.62 SS G_CDS: -1.56 Total: -32.18 kcal Total: -71.62 1.81 -69.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307577198.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.825 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds