Wall clock time and date at job start Thu Apr 9 2020 14:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86796 * 120.00315 * 2 1 4 4 H 1.48499 * 109.47566 * 270.11712 * 3 2 1 5 5 H 1.48505 * 109.46861 * 30.11324 * 3 2 1 6 6 H 1.48493 * 109.47509 * 150.11493 * 3 2 1 7 7 C 1.40134 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 346.88671 * 7 2 1 9 9 C 1.40805 * 119.99694 * 166.88790 * 7 2 1 10 10 C 1.40762 * 120.34073 * 326.70306 * 9 7 2 11 11 C 1.36438 * 120.00064 * 179.97438 * 10 9 7 12 12 C 1.38946 * 120.71653 * 359.97438 * 11 10 9 13 13 C 1.38044 * 120.69374 * 359.72028 * 12 11 10 14 14 C 1.39326 * 119.96745 * 0.56156 * 13 12 11 15 15 C 1.47448 * 120.35073 * 179.72041 * 14 13 12 16 16 N 1.32266 * 126.88934 * 173.88890 * 15 14 13 17 17 N 1.28817 * 107.86197 * 180.26320 * 16 15 14 18 18 N 1.28647 * 109.83949 * 359.75200 * 17 16 15 19 19 N 1.29012 * 109.17463 * 359.97438 * 18 17 16 20 20 H 0.96994 * 126.55301 * 179.97438 * 19 18 17 21 21 H 0.97000 * 119.99784 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00192 * 359.95484 * 10 9 7 23 23 H 1.07991 * 119.64039 * 179.97438 * 11 10 9 24 24 H 1.08002 * 119.65413 * 180.02562 * 12 11 10 25 25 H 1.08001 * 120.01637 * 180.28143 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.4865 2.0478 -1.4000 5 1 1.4400 2.6519 0.7025 6 1 3.5401 1.4394 0.6976 7 6 2.0079 -1.2136 -0.0005 8 1 1.4890 -2.1368 0.2112 9 6 3.3884 -1.2294 -0.2772 10 6 3.9431 -0.3038 -1.1812 11 6 5.2818 -0.3250 -1.4437 12 6 6.1114 -1.2533 -0.8268 13 6 5.5995 -2.1701 0.0692 14 6 4.2356 -2.1780 0.3540 15 6 3.6788 -3.1576 1.3051 16 7 2.4357 -3.2105 1.7536 17 7 2.3517 -4.2046 2.5686 18 7 3.4914 -4.7947 2.6564 19 7 4.3407 -4.1914 1.8954 20 1 5.2735 -4.4262 1.7710 21 1 -0.4850 0.8401 -0.0004 22 1 3.3089 0.4228 -1.6672 23 1 5.7011 0.3875 -2.1386 24 1 7.1688 -1.2544 -1.0470 25 1 6.2551 -2.8838 0.5459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307685519.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:28 Heat of formation + Delta-G solvation = 110.483355 kcal Electronic energy + Delta-G solvation = -13767.411438 eV Core-core repulsion = 11361.368860 eV Total energy + Delta-G solvation = -2406.042578 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.76769 -39.66658 -35.75354 -35.29960 -34.05993 -32.33854 -30.83055 -27.29690 -25.41391 -24.48337 -23.00893 -21.96842 -19.87926 -19.17135 -17.89638 -17.58887 -16.71927 -15.81454 -15.65973 -14.90937 -14.57396 -13.99816 -13.80814 -13.50233 -13.19508 -12.91526 -12.62949 -12.32921 -12.25035 -11.80469 -11.65099 -11.51813 -11.32303 -11.00376 -9.53898 -9.31314 -8.88724 -6.48403 -0.10128 0.82571 0.86225 1.28157 1.41271 1.50141 1.59352 1.70845 2.10912 2.64807 3.46187 3.52510 3.64195 4.24888 4.40611 4.52450 4.67530 4.79361 4.85968 5.00491 5.26355 5.42246 5.72437 5.79096 5.93596 6.00682 6.22908 6.46816 6.69579 6.77366 7.79711 8.16568 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.014296 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.907639 B = 1958.109053 C = 2853.306362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.042 3.958 3 Si 0.967 3.033 4 H -0.244 1.244 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.435 4.435 8 H 0.083 0.917 9 C 0.099 3.901 10 C -0.243 4.243 11 C -0.057 4.057 12 C -0.227 4.227 13 C -0.042 4.042 14 C -0.188 4.188 15 C 0.279 3.721 16 N -0.330 5.330 17 N -0.118 5.118 18 N -0.109 5.109 19 N -0.408 5.408 20 H 0.469 0.531 21 H 0.296 0.704 22 H 0.107 0.893 23 H 0.137 0.863 24 H 0.146 0.854 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 0.598 -1.904 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.169 1.169 5 H -0.210 1.210 6 H -0.174 1.174 7 C -0.464 4.464 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.262 4.262 11 C -0.076 4.076 12 C -0.246 4.246 13 C -0.062 4.062 14 C -0.195 4.195 15 C 0.007 3.993 16 N -0.180 5.180 17 N -0.113 5.113 18 N -0.096 5.096 19 N -0.142 5.142 20 H 0.320 0.680 21 H 0.107 0.893 22 H 0.125 0.875 23 H 0.155 0.845 24 H 0.164 0.836 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.260 0.068 -1.016 11.306 hybrid contribution 0.685 0.565 -0.386 0.968 sum 11.945 0.633 -1.402 12.044 Atomic orbital electron populations 1.69668 1.09566 1.31790 1.34494 1.27078 0.95439 1.04507 0.90499 0.85520 0.79311 0.75939 0.80316 1.16897 1.20975 1.17376 1.19965 0.92774 0.96176 1.37508 0.89940 1.17714 0.92389 0.90954 0.89612 1.21035 0.96939 1.04427 1.03799 1.21013 0.92522 0.97075 0.96979 1.20849 1.00351 0.99899 1.03483 1.21038 0.91447 0.97720 0.95969 1.17555 0.94184 1.03071 1.04690 1.24413 0.87735 0.90815 0.96301 1.75884 1.16194 1.14608 1.11322 1.78424 1.14516 1.03960 1.14405 1.78410 0.96593 1.20419 1.14174 1.46193 1.15123 1.21138 1.31746 0.67972 0.89309 0.87537 0.84527 0.83634 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.24 13.92 21.86 0.30 -44.93 15 2 C 0.04 2.18 5.45 85.32 0.47 2.65 15 3 Si 0.97 40.48 24.50 68.60 1.68 42.16 15 4 H -0.24 -9.22 6.55 99.48 0.65 -8.57 15 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 15 6 H -0.25 -10.54 6.92 99.48 0.69 -9.86 15 7 C -0.44 -23.77 8.38 23.36 0.20 -23.57 15 8 H 0.08 5.07 6.11 -2.91 -0.02 5.06 15 9 C 0.10 4.67 5.09 -21.10 -0.11 4.57 15 10 C -0.24 -10.04 7.08 22.47 0.16 -9.88 15 11 C -0.06 -1.87 9.96 22.02 0.22 -1.65 15 12 C -0.23 -6.60 10.03 22.39 0.22 -6.38 15 13 C -0.04 -1.29 9.71 22.49 0.22 -1.08 15 14 C -0.19 -7.81 5.93 -19.66 -0.12 -7.93 15 15 C 0.28 11.87 7.85 136.25 1.07 12.93 15 16 N -0.33 -16.70 9.42 -51.41 -0.48 -17.19 15 17 N -0.12 -5.55 13.40 37.02 0.50 -5.05 15 18 N -0.11 -4.23 13.45 37.02 0.50 -3.73 15 19 N -0.41 -13.46 6.99 -51.49 -0.36 -13.82 15 20 H 0.47 10.00 8.25 -220.17 -1.82 8.18 15 21 H 0.30 14.41 8.29 -92.71 -0.77 13.65 15 22 H 0.11 4.40 4.69 -2.91 -0.01 4.39 15 23 H 0.14 3.50 8.06 -2.92 -0.02 3.48 15 24 H 0.15 3.08 8.06 -2.91 -0.02 3.06 15 25 H 0.14 3.01 7.33 -2.91 -0.02 2.99 15 Total: -1.00 -65.09 222.54 3.82 -61.26 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -0.64 Total: 11.65 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 2.33 Total: -30.34 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: 0.45 Total: -84.73 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.68 Total: 42.16 kcal Total: -65.09 3.82 -61.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685519.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.746 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds