Wall clock time and date at job start Thu Apr 9 2020 14:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48503 * 109.46742 * 269.99764 * 3 2 1 5 5 H 1.48496 * 109.46943 * 29.99058 * 3 2 1 6 6 H 1.48493 * 109.47567 * 149.99669 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.46660 * 345.00014 * 13 11 10 15 15 F 1.39892 * 109.46946 * 105.00230 * 13 11 10 16 16 C 1.52998 * 109.47180 * 225.00716 * 13 11 10 17 17 C 1.53934 * 113.72966 * 276.72436 * 16 13 11 18 18 N 1.47963 * 86.18302 * 221.92413 * 17 16 13 19 19 C 1.47957 * 90.76044 * 24.68844 * 18 17 16 20 20 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 22 22 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 23 23 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 24 24 H 1.08996 * 112.94417 * 48.42801 * 16 13 11 25 25 H 1.09001 * 113.76190 * 336.23725 * 17 16 13 26 26 H 1.09003 * 113.75986 * 107.60362 * 17 16 13 27 27 H 1.00901 * 110.99842 * 271.79681 * 18 17 16 28 28 H 1.08998 * 113.76110 * 220.99215 * 19 18 17 29 29 H 1.09003 * 113.76044 * 89.62741 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5612 -5.1049 0.0108 13 6 2.7329 -6.0289 0.0068 14 1 3.7226 -5.6609 -0.2637 15 9 2.7805 -6.6010 1.2825 16 6 2.2858 -7.0826 -1.0084 17 6 1.2249 -8.0562 -0.4642 18 7 1.9894 -9.1189 -1.1536 19 6 3.2215 -8.3023 -1.0883 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8902 23 1 3.1567 -3.4355 0.0009 24 1 2.0356 -6.6571 -1.9802 25 1 1.2282 -8.1471 0.6220 26 1 0.2284 -7.8947 -0.8755 27 1 1.6779 -9.2279 -2.1072 28 1 3.8204 -8.3374 -1.9983 29 1 3.8089 -8.4651 -0.1846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388164255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:42 Heat of formation + Delta-G solvation = -57.136395 kcal Electronic energy + Delta-G solvation = -14416.449274 eV Core-core repulsion = 11675.909277 eV Total energy + Delta-G solvation = -2740.539997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.77407 -39.53692 -38.46475 -34.35001 -32.46567 -30.45765 -27.43289 -26.06800 -24.80935 -22.46651 -20.26757 -19.85884 -17.73480 -16.83936 -16.27663 -16.07499 -15.84523 -14.97669 -14.46497 -13.96425 -13.53180 -13.45638 -12.81171 -12.66371 -12.51470 -12.09692 -11.90151 -11.83200 -11.10826 -10.99823 -10.94185 -10.73311 -10.36431 -9.48854 -9.18762 -8.82665 -8.58198 -8.05235 -6.23497 -4.31247 3.01554 3.20011 3.26278 3.28694 3.62732 3.88348 4.24947 4.33632 4.49087 4.74170 5.00782 5.12744 5.17003 5.26429 5.36797 5.63663 5.75114 5.80450 5.87471 6.17138 7.16461 7.17966 7.23169 7.40145 7.55203 7.87432 8.42466 8.63920 8.88055 9.35296 10.86623 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.069243 B = 0.005829 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.277598 B = 4802.388214 C = 4933.213539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.701 5.701 11 C 0.477 3.523 12 O -0.535 6.535 13 C 0.087 3.913 14 H 0.097 0.903 15 F -0.190 7.190 16 C -0.175 4.175 17 C 0.037 3.963 18 N -0.662 5.662 19 C 0.025 3.975 20 H 0.267 0.733 21 H 0.029 0.971 22 H 0.030 0.970 23 H 0.393 0.607 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.335 0.665 28 H 0.076 0.924 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 -11.650 -2.906 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.350 5.350 11 C 0.258 3.742 12 O -0.413 6.413 13 C 0.047 3.953 14 H 0.115 0.885 15 F -0.171 7.171 16 C -0.195 4.195 17 C -0.092 4.092 18 N -0.288 5.288 19 C -0.105 4.105 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.226 0.774 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.515 -12.325 -2.320 14.133 hybrid contribution 0.786 1.983 -0.629 2.224 sum 7.301 -10.342 -2.950 12.999 Atomic orbital electron populations 1.69972 1.06137 1.27449 1.48605 1.24958 0.94940 0.99528 0.94551 0.86386 0.79631 0.82487 0.78253 1.20414 1.20930 1.19694 1.21201 0.93300 0.90329 1.53630 0.91794 1.19196 0.88279 0.81826 0.97994 1.46582 1.11460 1.06006 1.70922 1.20696 0.89711 0.84641 0.79106 1.90685 1.16317 1.84645 1.49629 1.21490 1.00555 0.92775 0.80508 0.88481 1.92832 1.97648 1.85832 1.40796 1.24799 0.98952 0.95816 0.99942 1.23571 0.96708 0.87400 1.01557 1.65090 1.03724 1.40347 1.19625 1.23717 0.94043 0.89785 1.02984 0.92340 0.95279 0.95224 0.77428 0.87320 0.87629 0.90203 0.85078 0.90579 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.29 55.43 0.74 -24.98 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 15 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 15 9 C 0.25 6.43 5.43 -5.19 -0.03 6.40 15 10 N -0.70 -14.37 5.55 -61.47 -0.34 -14.71 15 11 C 0.48 9.27 7.17 -10.98 -0.08 9.20 15 12 O -0.54 -12.46 16.25 5.56 0.09 -12.37 15 13 C 0.09 1.25 3.78 -27.88 -0.11 1.15 15 14 H 0.10 1.07 8.00 -51.93 -0.42 0.66 15 15 F -0.19 -2.99 15.51 2.25 0.03 -2.96 15 16 C -0.17 -2.19 3.54 -89.69 -0.32 -2.50 15 17 C 0.04 0.50 7.85 -2.77 -0.02 0.48 15 18 N -0.66 -7.62 8.56 -117.00 -1.00 -8.62 15 19 C 0.02 0.25 8.39 -2.77 -0.02 0.23 15 20 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.39 6.78 8.21 -40.82 -0.34 6.44 15 24 H 0.11 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.11 1.56 7.13 -51.93 -0.37 1.19 15 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.34 3.24 8.89 -39.29 -0.35 2.89 15 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 29 H 0.10 1.06 7.90 -51.93 -0.41 0.65 15 LS Contribution 257.65 15.07 3.88 3.88 Total: -1.00 -31.26 257.65 -6.14 -37.40 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.53 Total: 5.11 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.99 Total: 1.73 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.61 Total: -48.31 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.03 Total: -2.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.26 -6.14 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388164255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.739 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds