Wall clock time and date at job start Thu Apr 9 2020 14:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48503 * 109.46742 * 269.99764 * 3 2 1 5 5 H 1.48496 * 109.46943 * 29.99058 * 3 2 1 6 6 H 1.48493 * 109.47567 * 149.99669 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.46660 * 345.00014 * 13 11 10 15 15 F 1.39892 * 109.46946 * 105.00230 * 13 11 10 16 16 C 1.52998 * 109.47180 * 225.00716 * 13 11 10 17 17 C 1.53934 * 113.72966 * 276.72436 * 16 13 11 18 18 N 1.47963 * 86.18302 * 221.92413 * 17 16 13 19 19 C 1.47957 * 90.76044 * 24.68844 * 18 17 16 20 20 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 22 22 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 23 23 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 24 24 H 1.08996 * 112.94417 * 48.42801 * 16 13 11 25 25 H 1.09001 * 113.76190 * 336.23725 * 17 16 13 26 26 H 1.09003 * 113.75986 * 107.60362 * 17 16 13 27 27 H 1.00901 * 110.99842 * 271.79681 * 18 17 16 28 28 H 1.08998 * 113.76110 * 220.99215 * 19 18 17 29 29 H 1.09003 * 113.76044 * 89.62741 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5612 -5.1049 0.0108 13 6 2.7329 -6.0289 0.0068 14 1 3.7226 -5.6609 -0.2637 15 9 2.7805 -6.6010 1.2825 16 6 2.2858 -7.0826 -1.0084 17 6 1.2249 -8.0562 -0.4642 18 7 1.9894 -9.1189 -1.1536 19 6 3.2215 -8.3023 -1.0883 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8902 23 1 3.1567 -3.4355 0.0009 24 1 2.0356 -6.6571 -1.9802 25 1 1.2282 -8.1471 0.6220 26 1 0.2284 -7.8947 -0.8755 27 1 1.6779 -9.2279 -2.1072 28 1 3.8204 -8.3374 -1.9983 29 1 3.8089 -8.4651 -0.1846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388164255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:41 Heat of formation + Delta-G solvation = -82.965303 kcal Electronic energy + Delta-G solvation = -14417.569300 eV Core-core repulsion = 11675.909277 eV Total energy + Delta-G solvation = -2741.660022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.00444 -40.77551 -39.86981 -36.25547 -34.44529 -31.74167 -29.29708 -26.99456 -26.18994 -24.30066 -21.76030 -21.02603 -19.37956 -17.98158 -17.92663 -17.29452 -17.27899 -16.65283 -16.14380 -15.65449 -15.16264 -14.47145 -14.16208 -13.92374 -13.85012 -13.71996 -13.56134 -13.11466 -12.96052 -12.73214 -12.25523 -11.99689 -11.77281 -11.52380 -10.83885 -10.75503 -9.97054 -9.53585 -8.31941 -6.48949 1.42241 1.43220 1.45372 1.56246 2.12470 2.40176 2.94363 3.03371 3.25958 3.41103 3.66780 3.74612 4.09250 4.18466 4.51869 4.68895 4.77123 4.78113 4.96421 5.03939 5.17730 5.18040 5.38375 5.58789 5.79446 6.36377 6.59802 6.71299 7.16627 7.30982 8.80127 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.069243 B = 0.005829 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.277598 B = 4802.388214 C = 4933.213539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.263 3.737 10 N -0.696 5.696 11 C 0.472 3.528 12 O -0.579 6.579 13 C 0.099 3.901 14 H 0.144 0.856 15 F -0.196 7.196 16 C -0.175 4.175 17 C 0.028 3.972 18 N -0.665 5.665 19 C 0.040 3.960 20 H 0.269 0.731 21 H -0.006 1.006 22 H -0.012 1.012 23 H 0.412 0.588 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.347 0.653 28 H 0.108 0.892 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -11.719 -3.555 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.140 3.860 10 N -0.346 5.346 11 C 0.256 3.744 12 O -0.460 6.460 13 C 0.059 3.941 14 H 0.161 0.839 15 F -0.177 7.177 16 C -0.195 4.195 17 C -0.102 4.102 18 N -0.293 5.293 19 C -0.090 4.090 20 H 0.078 0.922 21 H 0.012 0.988 22 H 0.006 0.994 23 H 0.248 0.752 24 H 0.132 0.868 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.162 0.838 28 H 0.126 0.874 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.383 -12.431 -2.976 15.857 hybrid contribution -0.153 1.930 -0.422 1.981 sum 9.230 -10.502 -3.397 14.388 Atomic orbital electron populations 1.70133 1.08289 1.28647 1.49813 1.26068 0.95775 1.03941 0.93777 0.85147 0.78478 0.76893 0.78660 1.19454 1.21097 1.17902 1.21612 0.94412 0.90425 1.53110 0.89581 1.18633 0.88703 0.84182 0.94433 1.46313 1.11613 1.05399 1.71248 1.21740 0.90180 0.85356 0.77123 1.90665 1.18881 1.85364 1.51041 1.21577 1.00946 0.90937 0.80655 0.83888 1.92828 1.97621 1.85717 1.41554 1.24911 0.99500 0.95733 0.99396 1.23472 0.96827 0.89120 1.00755 1.65050 1.04039 1.39785 1.20405 1.23762 0.93460 0.87113 1.04660 0.92198 0.98811 0.99393 0.75185 0.86766 0.89367 0.91419 0.83788 0.87414 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 15 2 C 0.00 0.23 5.46 84.66 0.46 0.69 15 3 Si 0.99 41.49 29.54 68.60 2.03 43.52 15 4 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 5 H -0.29 -12.00 7.11 99.48 0.71 -11.29 15 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 7 C -0.56 -29.64 9.28 25.60 0.24 -29.41 15 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 15 9 C 0.26 14.13 5.43 85.63 0.46 14.59 15 10 N -0.70 -28.32 5.55 -466.78 -2.59 -30.90 15 11 C 0.47 18.27 7.17 87.66 0.63 18.90 15 12 O -0.58 -27.88 16.25 -3.03 -0.05 -27.93 15 13 C 0.10 2.61 3.78 29.85 0.11 2.73 15 14 H 0.14 2.54 8.00 -2.39 -0.02 2.52 15 15 F -0.20 -5.85 15.51 44.97 0.70 -5.15 15 16 C -0.18 -4.01 3.54 -10.15 -0.04 -4.05 15 17 C 0.03 0.74 7.85 86.40 0.68 1.42 15 18 N -0.67 -13.99 8.56 -524.08 -4.48 -18.47 15 19 C 0.04 0.68 8.39 86.41 0.72 1.40 15 20 H 0.27 14.97 8.31 -92.70 -0.77 14.20 15 21 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 23 H 0.41 13.41 8.21 -92.70 -0.76 12.65 15 24 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.09 2.63 7.13 -2.39 -0.02 2.61 15 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.35 5.95 8.89 -89.69 -0.80 5.15 15 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15 29 H 0.10 1.79 7.90 -2.39 -0.02 1.77 15 Total: -1.00 -69.89 257.65 -1.22 -71.11 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.38 Total: 16.66 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 3.27 Total: 6.28 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -6.79 Total: -104.50 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.70 Total: -5.15 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.89 -1.22 -71.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388164255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.853 kcal (2) G-P(sol) polarization free energy of solvation -69.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds