Wall clock time and date at job start Thu Apr 9 2020 14:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00296 * 2 1 4 4 C 1.50702 * 110.45378 * 62.05241 * 3 2 1 5 5 O 1.21214 * 120.00024 * 212.10223 * 4 3 2 6 6 O 1.34302 * 120.00262 * 32.09556 * 4 3 2 7 7 C 1.34926 * 117.00451 * 179.97438 * 6 4 3 8 8 H 1.08008 * 119.99420 * 0.02562 * 7 6 4 9 9 C 1.38750 * 120.00240 * 180.02562 * 7 6 4 10 10 N 1.31438 * 120.00392 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99786 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47088 * 180.02562 * 11 9 7 13 13 H 1.48494 * 109.47120 * 300.00533 * 11 9 7 14 14 H 1.48503 * 109.46697 * 60.00664 * 11 9 7 15 15 C 1.54504 * 110.50993 * 299.44679 * 3 2 1 16 16 C 1.54473 * 104.06565 * 241.21250 * 15 3 2 17 17 O 1.44429 * 104.80262 * 23.98065 * 16 15 3 18 18 C 1.44429 * 105.27134 * 319.48493 * 17 16 15 19 19 H 1.08998 * 109.47309 * 305.94626 * 1 2 3 20 20 H 1.09000 * 109.47224 * 65.94819 * 1 2 3 21 21 H 1.09006 * 109.47272 * 185.94392 * 1 2 3 22 22 H 0.97006 * 119.99356 * 0.02562 * 10 9 7 23 23 H 1.09002 * 110.51674 * 359.86196 * 15 3 2 24 24 H 1.09008 * 110.51030 * 122.56824 * 15 3 2 25 25 H 1.09004 * 110.37517 * 142.81036 * 16 15 3 26 26 H 1.08999 * 110.37444 * 265.04032 * 16 15 3 27 27 H 1.08994 * 110.37246 * 281.67995 * 18 17 16 28 28 H 1.08999 * 110.36882 * 159.34208 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6199 2.0557 1.2473 5 8 1.4847 3.2598 1.2130 6 8 1.4217 1.3902 2.3970 7 6 1.0747 2.1218 3.4763 8 1 0.9678 3.1932 3.3907 9 6 0.8553 1.4978 4.6960 10 7 0.9859 0.1941 4.8002 11 14 0.3742 2.5107 6.1901 12 1 0.1998 1.6139 7.3607 13 1 1.4413 3.5016 6.4808 14 1 -0.9005 3.2217 5.9164 15 6 1.5805 2.0893 -1.2602 16 6 2.9093 2.3814 -1.9918 17 8 3.8170 1.3568 -1.5313 18 6 3.5478 1.2166 -0.1193 19 1 -0.3634 0.6032 0.8319 20 1 -0.3634 0.4188 -0.9384 21 1 -0.3634 -1.0222 0.1064 22 1 1.2361 -0.3318 4.0244 23 1 0.9266 1.4803 -1.8844 24 1 1.0857 3.0196 -0.9810 25 1 2.7721 2.3098 -3.0708 26 1 3.2816 3.3697 -1.7221 27 1 4.0191 2.0255 0.4389 28 1 3.9011 0.2502 0.2402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388798932.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:43 Heat of formation + Delta-G solvation = -192.408448 kcal Electronic energy + Delta-G solvation = -15358.136434 eV Core-core repulsion = 12567.065060 eV Total energy + Delta-G solvation = -2791.071374 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05339 -40.22209 -38.21951 -37.53509 -34.35960 -32.49829 -30.70208 -27.66666 -27.21811 -24.87943 -23.87416 -21.39235 -20.28266 -19.40048 -18.14145 -17.48964 -17.22732 -16.58193 -16.29307 -16.03733 -15.78020 -15.61065 -15.27548 -14.11679 -13.78606 -13.38611 -13.24476 -12.98610 -12.78710 -12.44576 -12.41845 -12.23876 -11.96062 -11.93246 -11.50748 -11.00066 -10.75375 -10.72566 -9.09862 -6.50795 1.08764 1.45462 1.62657 1.77212 1.94545 2.35170 2.48905 2.83057 2.92070 3.25133 3.56646 3.96314 4.00937 4.09916 4.26161 4.30631 4.38640 4.48299 4.64633 4.67803 4.71015 4.78162 5.21105 5.46847 5.77934 6.07589 6.22880 6.77999 7.47612 8.35387 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.009064 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.904484 B = 3088.363291 C = 3259.205405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.367 6.367 3 C 0.102 3.898 4 C 0.381 3.619 5 O -0.566 6.566 6 O -0.243 6.243 7 C -0.500 4.500 8 H 0.073 0.927 9 C -0.022 4.022 10 N -0.891 5.891 11 Si 1.144 2.856 12 H -0.263 1.263 13 H -0.264 1.264 14 H -0.263 1.263 15 C -0.169 4.169 16 C 0.049 3.951 17 O -0.369 6.369 18 C 0.071 3.929 19 H 0.015 0.985 20 H 0.074 0.926 21 H 0.112 0.888 22 H 0.268 0.732 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 1.595 -10.357 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.285 6.285 3 C 0.060 3.940 4 C 0.228 3.772 5 O -0.464 6.464 6 O -0.150 6.150 7 C -0.575 4.575 8 H 0.091 0.909 9 C -0.222 4.222 10 N -0.524 5.524 11 Si 0.959 3.041 12 H -0.187 1.187 13 H -0.188 1.188 14 H -0.188 1.188 15 C -0.206 4.206 16 C -0.026 4.026 17 O -0.287 6.287 18 C -0.006 4.006 19 H 0.034 0.966 20 H 0.092 0.908 21 H 0.131 0.869 22 H 0.077 0.923 23 H 0.132 0.868 24 H 0.108 0.892 25 H 0.153 0.847 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.274 1.461 -8.871 8.995 hybrid contribution -0.035 0.446 -1.371 1.442 sum 0.239 1.907 -10.242 10.421 Atomic orbital electron populations 1.23007 0.79499 1.04317 1.00382 1.87946 1.21565 1.24566 1.94437 1.22838 0.97543 0.83962 0.89627 1.24505 0.78736 0.87373 0.86587 1.90523 1.52827 1.16871 1.86181 1.83735 1.72191 1.41461 1.17658 1.22365 1.53515 0.93501 0.88105 0.90892 1.28431 0.93823 0.97964 1.01965 1.70668 1.41701 1.06194 1.33861 0.82616 0.77821 0.73339 0.70327 1.18653 1.18838 1.18796 1.23575 1.01345 1.01629 0.94071 1.23619 0.85960 0.91654 1.01415 1.89134 1.59937 1.58757 1.20906 1.23242 0.88749 1.04321 0.84298 0.96648 0.90803 0.86934 0.92348 0.86773 0.89249 0.84700 0.91137 0.90692 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 10.35 113.37 1.17 1.97 15 2 O -0.37 -14.21 10.18 -136.03 -1.38 -15.59 15 3 C 0.10 3.98 1.09 -10.53 -0.01 3.97 15 4 C 0.38 19.26 5.56 71.24 0.40 19.66 15 5 O -0.57 -30.66 14.88 20.76 0.31 -30.35 15 6 O -0.24 -14.17 8.34 19.78 0.16 -14.01 15 7 C -0.50 -30.37 9.65 67.94 0.66 -29.71 15 8 H 0.07 4.53 6.86 -2.91 -0.02 4.51 15 9 C -0.02 -1.24 5.49 84.87 0.47 -0.77 15 10 N -0.89 -53.75 13.69 21.62 0.30 -53.46 15 11 Si 1.14 48.32 29.92 68.60 2.05 50.38 15 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 13 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 14 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 15 C -0.17 -5.10 5.87 31.61 0.19 -4.92 15 16 C 0.05 1.25 7.63 72.48 0.55 1.81 15 17 O -0.37 -11.39 11.65 -148.98 -1.74 -13.13 15 18 C 0.07 2.49 6.92 72.48 0.50 2.99 15 19 H 0.01 0.62 6.71 -2.39 -0.02 0.60 15 20 H 0.07 1.96 6.65 -2.39 -0.02 1.94 15 21 H 0.11 3.22 8.14 -2.38 -0.02 3.20 15 22 H 0.27 16.68 7.97 -92.70 -0.74 15.94 15 23 H 0.11 2.85 6.56 -2.39 -0.02 2.83 15 24 H 0.09 2.96 6.82 -2.38 -0.02 2.94 15 25 H 0.14 2.38 8.14 -2.38 -0.02 2.36 15 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 27 H 0.08 2.67 7.86 -2.39 -0.02 2.66 15 28 H 0.12 3.97 8.09 -2.39 -0.02 3.95 15 Total: -1.00 -72.46 244.47 4.82 -67.63 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.20 Total: 13.53 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 3.92 Total: -5.01 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.30 Total: -53.46 kcal Atomic # 8 Polarization: -70.43 SS G_CDS: -2.65 Total: -73.08 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.38 kcal Total: -72.46 4.82 -67.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388798932.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.776 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds