Wall clock time and date at job start Thu Apr 9 2020 14:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99941 * 2 1 4 4 C 1.50701 * 110.43784 * 303.95696 * 3 2 1 5 5 O 1.21211 * 119.99812 * 144.09049 * 4 3 2 6 6 O 1.34312 * 119.99901 * 324.09066 * 4 3 2 7 7 C 1.34915 * 116.99642 * 179.97438 * 6 4 3 8 8 H 1.07999 * 120.00424 * 0.02562 * 7 6 4 9 9 C 1.38761 * 119.99544 * 180.27284 * 7 6 4 10 10 N 1.31434 * 120.00050 * 359.72980 * 9 7 6 11 11 Si 1.86800 * 119.99819 * 179.72606 * 9 7 6 12 12 H 1.48498 * 109.47142 * 60.00275 * 11 9 7 13 13 H 1.48501 * 109.47299 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47180 * 300.00268 * 11 9 7 15 15 C 1.54815 * 110.48526 * 66.50238 * 3 2 1 16 16 C 1.55230 * 101.98776 * 98.00449 * 15 3 2 17 17 O 1.44378 * 103.56415 * 36.87809 * 16 15 3 18 18 C 1.43744 * 106.98013 * 320.01311 * 17 16 15 19 19 H 1.09002 * 109.46924 * 185.33848 * 1 2 3 20 20 H 1.08997 * 109.47091 * 305.33646 * 1 2 3 21 21 H 1.09003 * 109.47306 * 65.33676 * 1 2 3 22 22 H 0.97002 * 120.00345 * 179.97438 * 10 9 7 23 23 H 1.09003 * 110.90849 * 216.12521 * 15 3 2 24 24 H 1.08996 * 110.90838 * 339.72763 * 15 3 2 25 25 H 1.09000 * 110.51571 * 278.38375 * 16 15 3 26 26 H 1.08994 * 110.64331 * 155.43792 * 16 15 3 27 27 H 1.09000 * 109.87663 * 267.09166 * 18 17 16 28 28 H 1.08997 * 109.87974 * 145.94164 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5036 2.1070 -1.1713 5 8 1.3090 3.2975 -1.0522 6 8 1.2679 1.5023 -2.3472 7 6 0.8152 2.2773 -3.3545 8 1 0.6586 3.3338 -3.1946 9 6 0.5457 1.7158 -4.5945 10 7 0.7367 0.4300 -4.7892 11 14 -0.0885 2.7873 -5.9870 12 1 0.9032 3.8522 -6.2833 13 1 -0.2966 1.9534 -7.1980 14 1 -1.3767 3.4081 -5.5867 15 6 1.7023 2.0356 1.3300 16 6 3.0055 1.7958 2.1386 17 8 4.0440 1.8755 1.1388 18 6 3.5479 1.2113 -0.0355 19 1 -0.3633 -1.0232 0.0956 20 1 -0.3633 0.5944 0.8383 21 1 -0.3634 0.4288 -0.9339 22 1 0.5480 0.0374 -5.6559 23 1 1.5402 3.1002 1.1609 24 1 0.8438 1.5875 1.8300 25 1 2.9922 0.8085 2.6004 26 1 3.1381 2.5716 2.8926 27 1 3.8555 0.1656 -0.0276 28 1 3.9290 1.7050 -0.9294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388798934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:45 Heat of formation + Delta-G solvation = -161.532451 kcal Electronic energy + Delta-G solvation = -15324.826950 eV Core-core repulsion = 12535.094460 eV Total energy + Delta-G solvation = -2789.732490 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24998 -38.30951 -36.66424 -35.24200 -32.20867 -30.93203 -29.28248 -26.16447 -25.55726 -23.18951 -22.20632 -19.50537 -17.88759 -17.53406 -16.49494 -15.95177 -15.18849 -14.75660 -14.69884 -14.39038 -14.29041 -13.65465 -13.11023 -12.61635 -12.31164 -11.80234 -11.54773 -11.45625 -11.22819 -11.05450 -10.67352 -10.49946 -10.47406 -9.91876 -9.75747 -9.49987 -8.83309 -8.63612 -6.47009 -4.15910 3.03394 3.14707 3.18841 3.34030 3.72785 3.93638 4.08654 4.38331 4.69881 5.01455 5.16103 5.27521 5.41988 5.56820 5.71650 5.79197 5.88179 5.91046 6.14495 6.18214 6.24609 6.55619 6.86950 7.31032 7.43058 7.86722 8.58572 9.00226 9.75519 10.69473 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.047433 B = 0.009046 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.169550 B = 3094.683218 C = 3257.520707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.359 6.359 3 C 0.105 3.895 4 C 0.375 3.625 5 O -0.547 6.547 6 O -0.196 6.196 7 C -0.389 4.389 8 H 0.095 0.905 9 C 0.046 3.954 10 N -0.857 5.857 11 Si 0.944 3.056 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.269 1.269 15 C -0.174 4.174 16 C 0.053 3.947 17 O -0.372 6.372 18 C 0.070 3.930 19 H 0.088 0.912 20 H 0.038 0.962 21 H 0.061 0.939 22 H 0.272 0.728 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -0.797 9.120 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.277 6.277 3 C 0.064 3.936 4 C 0.221 3.779 5 O -0.445 6.445 6 O -0.101 6.101 7 C -0.465 4.465 8 H 0.113 0.887 9 C -0.160 4.160 10 N -0.493 5.493 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.194 1.194 15 C -0.212 4.212 16 C -0.024 4.024 17 O -0.291 6.291 18 C -0.007 4.007 19 H 0.106 0.894 20 H 0.057 0.943 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.124 0.876 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.870 -0.754 8.964 9.037 hybrid contribution -0.824 0.547 -0.772 1.255 sum 0.046 -0.206 8.192 8.194 Atomic orbital electron populations 1.22897 0.80406 1.02596 1.01262 1.87922 1.20547 1.24606 1.94654 1.22546 0.95517 0.83640 0.91933 1.23393 0.81285 0.87407 0.85840 1.90552 1.53082 1.16571 1.84257 1.83967 1.68185 1.40611 1.17387 1.21247 1.44224 0.93107 0.87966 0.88695 1.25361 0.96464 0.96413 0.97726 1.69997 1.44254 1.10631 1.24391 0.85739 0.79495 0.78998 0.78932 1.19364 1.20268 1.19448 1.23738 0.99339 1.03816 0.94262 1.23542 0.85714 1.01488 0.91644 1.88879 1.38881 1.78334 1.23012 1.23030 0.88891 0.99166 0.89596 0.89359 0.94315 0.92044 0.91858 0.87589 0.89270 0.91814 0.88674 0.89821 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.33 101.05 1.04 1.47 15 2 O -0.36 -7.08 10.18 -47.44 -0.48 -7.56 15 3 C 0.11 2.12 1.02 -90.24 -0.09 2.02 15 4 C 0.38 9.46 5.51 36.01 0.20 9.66 15 5 O -0.55 -14.78 14.81 -19.05 -0.28 -15.06 15 6 O -0.20 -5.62 8.66 -25.48 -0.22 -5.84 15 7 C -0.39 -11.48 9.65 30.93 0.30 -11.18 15 8 H 0.10 2.81 6.86 -52.49 -0.36 2.45 15 9 C 0.05 1.28 5.49 -17.53 -0.10 1.18 15 10 N -0.86 -24.88 13.67 55.48 0.76 -24.12 15 11 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 15 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 14 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 15 C -0.17 -2.87 6.14 -24.59 -0.15 -3.02 15 16 C 0.05 0.74 7.72 38.34 0.30 1.04 15 17 O -0.37 -6.46 11.52 -35.23 -0.41 -6.87 15 18 C 0.07 1.30 7.18 37.73 0.27 1.57 15 19 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 20 H 0.04 0.58 6.35 -51.93 -0.33 0.25 15 21 H 0.06 1.30 6.67 -51.93 -0.35 0.95 15 22 H 0.27 7.22 8.31 -40.82 -0.34 6.89 15 23 H 0.11 1.91 6.82 -51.93 -0.35 1.55 15 24 H 0.09 1.27 6.35 -51.93 -0.33 0.94 15 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 15 27 H 0.08 1.42 7.97 -51.93 -0.41 1.00 15 28 H 0.10 1.95 7.69 -51.93 -0.40 1.55 15 LS Contribution 244.17 15.07 3.68 3.68 Total: -1.00 -32.79 244.17 -3.14 -35.93 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -2.94 Total: 1.02 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 1.77 Total: 2.75 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.76 Total: -24.12 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.39 Total: -35.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.79 -3.14 -35.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388798934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.598 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds